miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10725 3' -52.6 NC_002794.1 + 155889 1.07 0.010482
Target:  5'- uAGACACGAGAUCGGAAUAGACCGGCUc -3'
miRNA:   3'- -UCUGUGCUCUAGCCUUAUCUGGCCGA- -5'
10725 3' -52.6 NC_002794.1 + 191892 0.84 0.259677
Target:  5'- cGGAgGCGGGAUCGGcaccgGGACCGGCUg -3'
miRNA:   3'- -UCUgUGCUCUAGCCuua--UCUGGCCGA- -5'
10725 3' -52.6 NC_002794.1 + 156186 0.79 0.500885
Target:  5'- cGGACGCGucAUCGGAGUcgccggucggaGGGCCGGCg -3'
miRNA:   3'- -UCUGUGCucUAGCCUUA-----------UCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 183417 0.77 0.580578
Target:  5'- gGGACcagaaGCGGGAgCGGGAgcgGGACCGGCg -3'
miRNA:   3'- -UCUG-----UGCUCUaGCCUUa--UCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 118253 0.74 0.76221
Target:  5'- cGGGCugGAGGUCGGcc-GGGgCGGCg -3'
miRNA:   3'- -UCUGugCUCUAGCCuuaUCUgGCCGa -5'
10725 3' -52.6 NC_002794.1 + 126255 0.74 0.771689
Target:  5'- -cGCGCGAGGUCGGc---GGCUGGCUg -3'
miRNA:   3'- ucUGUGCUCUAGCCuuauCUGGCCGA- -5'
10725 3' -52.6 NC_002794.1 + 53628 0.73 0.799335
Target:  5'- cGGACggACGAGGUCGGccgAG-CCGGCg -3'
miRNA:   3'- -UCUG--UGCUCUAGCCuuaUCuGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 42675 0.73 0.808258
Target:  5'- cGGCACGGGGUaCGccg-AGACCGGCg -3'
miRNA:   3'- uCUGUGCUCUA-GCcuuaUCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 140678 0.73 0.81702
Target:  5'- cGGGCGC-AGGUCGGugcgacGGACCGGCc -3'
miRNA:   3'- -UCUGUGcUCUAGCCuua---UCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 191846 0.72 0.858135
Target:  5'- gAGACGCGcaaucguGGUCGuGAA-AGGCCGGCg -3'
miRNA:   3'- -UCUGUGCu------CUAGC-CUUaUCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 80173 0.71 0.90065
Target:  5'- uGGCGuCGAGGcgUUGGggUAuACCGGCUa -3'
miRNA:   3'- uCUGU-GCUCU--AGCCuuAUcUGGCCGA- -5'
10725 3' -52.6 NC_002794.1 + 89957 0.7 0.912991
Target:  5'- cGACGuCGAGGcguUCGGAccGUGGugcGCCGGCg -3'
miRNA:   3'- uCUGU-GCUCU---AGCCU--UAUC---UGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 71235 0.7 0.912991
Target:  5'- uAGugGCGGc--CGGcGUGGACCGGCa -3'
miRNA:   3'- -UCugUGCUcuaGCCuUAUCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 130150 0.7 0.92971
Target:  5'- cGGCGCGAGcgCGGGAUcacgcgcgcgAGAgccgccgcaCCGGCUc -3'
miRNA:   3'- uCUGUGCUCuaGCCUUA----------UCU---------GGCCGA- -5'
10725 3' -52.6 NC_002794.1 + 177871 0.69 0.934801
Target:  5'- cGACG-GAGAUCGGAAcgguuaucagAGACCGcGCg -3'
miRNA:   3'- uCUGUgCUCUAGCCUUa---------UCUGGC-CGa -5'
10725 3' -52.6 NC_002794.1 + 31719 0.69 0.939653
Target:  5'- -uGCGCGGGAUccCGGAugAGACCgGGCg -3'
miRNA:   3'- ucUGUGCUCUA--GCCUuaUCUGG-CCGa -5'
10725 3' -52.6 NC_002794.1 + 40525 0.69 0.944265
Target:  5'- cGACGCGccGA-CGGGAgacgaggGGGCCGGCg -3'
miRNA:   3'- uCUGUGCu-CUaGCCUUa------UCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 110638 0.69 0.944265
Target:  5'- cGGCgGCGGGGUCGGGuuucuCCGGCg -3'
miRNA:   3'- uCUG-UGCUCUAGCCUuaucuGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 112107 0.69 0.948641
Target:  5'- cAGGCGCGgccgggacgacGGcgCGGGgagGUAGAUCGGCa -3'
miRNA:   3'- -UCUGUGC-----------UCuaGCCU---UAUCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 21514 0.69 0.952783
Target:  5'- cGGCuCGAGGacgggCGGAucgGGAUCGGCUa -3'
miRNA:   3'- uCUGuGCUCUa----GCCUua-UCUGGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.