miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10725 3' -52.6 NC_002794.1 + 21514 0.69 0.952783
Target:  5'- cGGCuCGAGGacgggCGGAucgGGAUCGGCUa -3'
miRNA:   3'- uCUGuGCUCUa----GCCUua-UCUGGCCGA- -5'
10725 3' -52.6 NC_002794.1 + 31719 0.69 0.939653
Target:  5'- -uGCGCGGGAUccCGGAugAGACCgGGCg -3'
miRNA:   3'- ucUGUGCUCUA--GCCUuaUCUGG-CCGa -5'
10725 3' -52.6 NC_002794.1 + 36986 0.68 0.972945
Target:  5'- -cGCGCGcAGGUCGGcgaggcggacccGGUAGAgCGGCUc -3'
miRNA:   3'- ucUGUGC-UCUAGCC------------UUAUCUgGCCGA- -5'
10725 3' -52.6 NC_002794.1 + 40525 0.69 0.944265
Target:  5'- cGACGCGccGA-CGGGAgacgaggGGGCCGGCg -3'
miRNA:   3'- uCUGUGCu-CUaGCCUUa------UCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 41136 0.67 0.984249
Target:  5'- gGGuguCGCGGGuUCGcGA--AGACCGGCa -3'
miRNA:   3'- -UCu--GUGCUCuAGC-CUuaUCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 42675 0.73 0.808258
Target:  5'- cGGCACGGGGUaCGccg-AGACCGGCg -3'
miRNA:   3'- uCUGUGCUCUA-GCcuuaUCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 53628 0.73 0.799335
Target:  5'- cGGACggACGAGGUCGGccgAG-CCGGCg -3'
miRNA:   3'- -UCUG--UGCUCUAGCCuuaUCuGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 71235 0.7 0.912991
Target:  5'- uAGugGCGGc--CGGcGUGGACCGGCa -3'
miRNA:   3'- -UCugUGCUcuaGCCuUAUCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 72206 0.67 0.978012
Target:  5'- cAGGCgcaGCGGGcgcuGUCGGAAgaacacgauGGCCGGCa -3'
miRNA:   3'- -UCUG---UGCUC----UAGCCUUau-------CUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 80173 0.71 0.90065
Target:  5'- uGGCGuCGAGGcgUUGGggUAuACCGGCUa -3'
miRNA:   3'- uCUGU-GCUCU--AGCCuuAUcUGGCCGA- -5'
10725 3' -52.6 NC_002794.1 + 86927 0.66 0.991544
Target:  5'- cGugGCGGGcaggCGGGGcgGGAuCCGGCg -3'
miRNA:   3'- uCugUGCUCua--GCCUUa-UCU-GGCCGa -5'
10725 3' -52.6 NC_002794.1 + 89957 0.7 0.912991
Target:  5'- cGACGuCGAGGcguUCGGAccGUGGugcGCCGGCg -3'
miRNA:   3'- uCUGU-GCUCU---AGCCU--UAUC---UGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 92314 0.69 0.956693
Target:  5'- uGGGCGCGGGcggCGGGGgcccGGGCgGGCg -3'
miRNA:   3'- -UCUGUGCUCua-GCCUUa---UCUGgCCGa -5'
10725 3' -52.6 NC_002794.1 + 94865 0.66 0.98759
Target:  5'- -cGCugGAGGUgacguuuaCGGAGcGGAuCCGGCUg -3'
miRNA:   3'- ucUGugCUCUA--------GCCUUaUCU-GGCCGA- -5'
10725 3' -52.6 NC_002794.1 + 102465 0.67 0.984249
Target:  5'- gAGAUGCGGcgcGUCGGcGUGccGGCCGGCUu -3'
miRNA:   3'- -UCUGUGCUc--UAGCCuUAU--CUGGCCGA- -5'
10725 3' -52.6 NC_002794.1 + 105206 0.67 0.980265
Target:  5'- cGGACGCGGuGAUCaGggUcgacaGGGCCGuGCg -3'
miRNA:   3'- -UCUGUGCU-CUAGcCuuA-----UCUGGC-CGa -5'
10725 3' -52.6 NC_002794.1 + 108468 0.66 0.991544
Target:  5'- cGGCACGGGc-CGaGGGgcGACCGGCc -3'
miRNA:   3'- uCUGUGCUCuaGC-CUUauCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 110173 0.69 0.956693
Target:  5'- gGGGCAUGAGGcUCGaGAUGGGCC-GCUg -3'
miRNA:   3'- -UCUGUGCUCU-AGCcUUAUCUGGcCGA- -5'
10725 3' -52.6 NC_002794.1 + 110501 0.67 0.980265
Target:  5'- cGGCGCcugGAGAaagUCGGucgAGAUCGGCg -3'
miRNA:   3'- uCUGUG---CUCU---AGCCuuaUCUGGCCGa -5'
10725 3' -52.6 NC_002794.1 + 110638 0.69 0.944265
Target:  5'- cGGCgGCGGGGUCGGGuuucuCCGGCg -3'
miRNA:   3'- uCUG-UGCUCUAGCCUuaucuGGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.