Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10725 | 3' | -52.6 | NC_002794.1 | + | 111071 | 0.68 | 0.972118 |
Target: 5'- cAGACGCGcucccccgucggcaGGGUCGGcg-GGcCCGGCg -3' miRNA: 3'- -UCUGUGC--------------UCUAGCCuuaUCuGGCCGa -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 112107 | 0.69 | 0.948641 |
Target: 5'- cAGGCGCGgccgggacgacGGcgCGGGgagGUAGAUCGGCa -3' miRNA: 3'- -UCUGUGC-----------UCuaGCCU---UAUCUGGCCGa -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 113506 | 0.67 | 0.980265 |
Target: 5'- cGGC-CGAGAgccgCGGAGggAGcuccGCCGGCUc -3' miRNA: 3'- uCUGuGCUCUa---GCCUUa-UC----UGGCCGA- -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 115898 | 0.68 | 0.970117 |
Target: 5'- cGGAgCGCGGGGgguucgUGGggUGGACuUGGCg -3' miRNA: 3'- -UCU-GUGCUCUa-----GCCuuAUCUG-GCCGa -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 118253 | 0.74 | 0.76221 |
Target: 5'- cGGGCugGAGGUCGGcc-GGGgCGGCg -3' miRNA: 3'- -UCUGugCUCUAGCCuuaUCUgGCCGa -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 121589 | 0.67 | 0.978935 |
Target: 5'- cGGGCGCGGGGUCGuucggcgacgauuucGAAgucauCCGGCUg -3' miRNA: 3'- -UCUGUGCUCUAGC---------------CUUaucu-GGCCGA- -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 125740 | 0.68 | 0.960378 |
Target: 5'- cGGAgGCGGGccgCGGGAcggcGGCCGGCg -3' miRNA: 3'- -UCUgUGCUCua-GCCUUau--CUGGCCGa -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 126255 | 0.74 | 0.771689 |
Target: 5'- -cGCGCGAGGUCGGc---GGCUGGCUg -3' miRNA: 3'- ucUGUGCUCUAGCCuuauCUGGCCGA- -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 130150 | 0.7 | 0.92971 |
Target: 5'- cGGCGCGAGcgCGGGAUcacgcgcgcgAGAgccgccgcaCCGGCUc -3' miRNA: 3'- uCUGUGCUCuaGCCUUA----------UCU---------GGCCGA- -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 133013 | 0.68 | 0.970117 |
Target: 5'- cGAuUACGAcGUCGGcGAUAGAcCCGGCa -3' miRNA: 3'- uCU-GUGCUcUAGCC-UUAUCU-GGCCGa -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 136375 | 0.66 | 0.98759 |
Target: 5'- -aACAUGAGGUCGuug-AGcACCGGCUc -3' miRNA: 3'- ucUGUGCUCUAGCcuuaUC-UGGCCGA- -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 140678 | 0.73 | 0.81702 |
Target: 5'- cGGGCGC-AGGUCGGugcgacGGACCGGCc -3' miRNA: 3'- -UCUGUGcUCUAGCCuua---UCUGGCCGa -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 141446 | 0.66 | 0.991544 |
Target: 5'- gGGGCGcCGGGAgcggcgCGGcGUccGGACUGGCg -3' miRNA: 3'- -UCUGU-GCUCUa-----GCCuUA--UCUGGCCGa -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 145905 | 0.68 | 0.973217 |
Target: 5'- cGACGgGGGAgucgaccgcgccgagCGGAG-GGGCCGGCg -3' miRNA: 3'- uCUGUgCUCUa--------------GCCUUaUCUGGCCGa -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 146978 | 0.68 | 0.972945 |
Target: 5'- uGuCGCGAGGUCGGcgcc-GCCGGCc -3' miRNA: 3'- uCuGUGCUCUAGCCuuaucUGGCCGa -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 155889 | 1.07 | 0.010482 |
Target: 5'- uAGACACGAGAUCGGAAUAGACCGGCUc -3' miRNA: 3'- -UCUGUGCUCUAGCCUUAUCUGGCCGA- -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 156186 | 0.79 | 0.500885 |
Target: 5'- cGGACGCGucAUCGGAGUcgccggucggaGGGCCGGCg -3' miRNA: 3'- -UCUGUGCucUAGCCUUA-----------UCUGGCCGa -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 160324 | 0.66 | 0.985488 |
Target: 5'- gGGGCugGAGcgCGGA-UGGGCgacgaauuugaccgCGGCg -3' miRNA: 3'- -UCUGugCUCuaGCCUuAUCUG--------------GCCGa -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 177871 | 0.69 | 0.934801 |
Target: 5'- cGACG-GAGAUCGGAAcgguuaucagAGACCGcGCg -3' miRNA: 3'- uCUGUgCUCUAGCCUUa---------UCUGGC-CGa -5' |
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10725 | 3' | -52.6 | NC_002794.1 | + | 178275 | 0.68 | 0.970117 |
Target: 5'- cGGAgACGGGGUCGGucgAGcgaCGGCUc -3' miRNA: 3'- -UCUgUGCUCUAGCCuuaUCug-GCCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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