miRNA: 3'- uCuGUGCUCUAGCCuuaucUGGCCGa -5'
miRNA: 3'- -UCUG---UGCUC----UAGCCUUau-------CUGGCCGa -5'
miRNA: 3'- uCUGUgCUCUa--------------GCCUUaUCUGGCCGa -5'
miRNA: 3'- -UCUGU-GCUCUa-----GCCuUA--UCUGGCCGa -5'
Results 41 - 44 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10725 | 3' | -52.6 | NC_002794.1 | + | 146978 | 0.68 | 0.972945 |
|
Target: 5'- uGuCGCGAGGUCGGcgcc-GCCGGCc -3' miRNA: 3'- uCuGUGCUCUAGCCuuaucUGGCCGa -5' |
|||||||
| 10725 | 3' | -52.6 | NC_002794.1 | + | 72206 | 0.67 | 0.978012 |
|
Target: 5'- cAGGCgcaGCGGGcgcuGUCGGAAgaacacgauGGCCGGCa -3' miRNA: 3'- -UCUG---UGCUC----UAGCCUUau-------CUGGCCGa -5' |
|||||||
| 10725 | 3' | -52.6 | NC_002794.1 | + | 145905 | 0.68 | 0.973217 |
|
Target: 5'- cGACGgGGGAgucgaccgcgccgagCGGAG-GGGCCGGCg -3' miRNA: 3'- uCUGUgCUCUa--------------GCCUUaUCUGGCCGa -5' |
|||||||
| 10725 | 3' | -52.6 | NC_002794.1 | + | 141446 | 0.66 | 0.991544 |
|
Target: 5'- gGGGCGcCGGGAgcggcgCGGcGUccGGACUGGCg -3' miRNA: 3'- -UCUGU-GCUCUa-----GCCuUA--UCUGGCCGa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home