miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10725 5' -60.3 NC_002794.1 + 144359 0.66 0.837724
Target:  5'- cGGAGCCGGc----UGCCGUUcuacucCCGGGu -3'
miRNA:   3'- -CCUCGGCCcacgaACGGCAGu-----GGCCC- -5'
10725 5' -60.3 NC_002794.1 + 36008 0.66 0.837724
Target:  5'- cGGGGCuCGGGcgGCggaauccGCCGUCcggcCCGGc -3'
miRNA:   3'- -CCUCG-GCCCa-CGaa-----CGGCAGu---GGCCc -5'
10725 5' -60.3 NC_002794.1 + 108355 0.66 0.829894
Target:  5'- cGGAGCgGGGaGCggaggagGaCCGggCGCCGGa -3'
miRNA:   3'- -CCUCGgCCCaCGaa-----C-GGCa-GUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 11261 0.66 0.829894
Target:  5'- aGGGGUCGGGcGac-GCgGUCACCuGGu -3'
miRNA:   3'- -CCUCGGCCCaCgaaCGgCAGUGGcCC- -5'
10725 5' -60.3 NC_002794.1 + 105998 0.66 0.829894
Target:  5'- cGAGCCGaugcugccccGcGUGUacgagauuaugUUGCCGUCGCUGGa -3'
miRNA:   3'- cCUCGGC----------C-CACG-----------AACGGCAGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 92308 0.66 0.821905
Target:  5'- cGGGGCUGGGcGCgggcgGCgGgggC-CCGGGc -3'
miRNA:   3'- -CCUCGGCCCaCGaa---CGgCa--GuGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 148126 0.66 0.821905
Target:  5'- cGGuGUCGGGcGCgggGCC---GCCGGGg -3'
miRNA:   3'- -CCuCGGCCCaCGaa-CGGcagUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 142021 0.66 0.821905
Target:  5'- --uGCCGgaGGUGCUUcGCCuGUCGCgGGa -3'
miRNA:   3'- ccuCGGC--CCACGAA-CGG-CAGUGgCCc -5'
10725 5' -60.3 NC_002794.1 + 147165 0.66 0.818665
Target:  5'- gGGccAGCUGGaccgacugaacguGUGCgagugguugaacucUUGCCGUCggGCCGGGg -3'
miRNA:   3'- -CC--UCGGCC-------------CACG--------------AACGGCAG--UGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 95824 0.66 0.813761
Target:  5'- cGGcGGCCGGGggaGCggcgGCgGcgGCCGGGg -3'
miRNA:   3'- -CC-UCGGCCCa--CGaa--CGgCagUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 5790 0.66 0.813761
Target:  5'- aGAGCCGGG-GUcUGaCCGUCGgugagaccCCGGu -3'
miRNA:   3'- cCUCGGCCCaCGaAC-GGCAGU--------GGCCc -5'
10725 5' -60.3 NC_002794.1 + 181903 0.66 0.811289
Target:  5'- -cAGCgCGGGUcguacaccacccgcGCgacgGCCGUCucCCGGGa -3'
miRNA:   3'- ccUCG-GCCCA--------------CGaa--CGGCAGu-GGCCC- -5'
10725 5' -60.3 NC_002794.1 + 87056 0.66 0.805471
Target:  5'- cGGGGCCGGGUccuguaGCgacaGCaCGgugCagGCCGGGc -3'
miRNA:   3'- -CCUCGGCCCA------CGaa--CG-GCa--G--UGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 86760 0.66 0.797041
Target:  5'- -aAGCCGGGUGgaUcGCCGggaacgaACCGGc -3'
miRNA:   3'- ccUCGGCCCACgaA-CGGCag-----UGGCCc -5'
10725 5' -60.3 NC_002794.1 + 83421 0.66 0.797041
Target:  5'- cGGAuGCUGGccgGCaaGCCgGUCACCGGc -3'
miRNA:   3'- -CCU-CGGCCca-CGaaCGG-CAGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 43635 0.66 0.797041
Target:  5'- aGGAGCUGGuGgaacacGCUgccGCCGaacgaGCCGGGc -3'
miRNA:   3'- -CCUCGGCC-Ca-----CGAa--CGGCag---UGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 80421 0.66 0.788478
Target:  5'- uGGcGCCGGGcGgg-GCCGcCGCCGGcGg -3'
miRNA:   3'- -CCuCGGCCCaCgaaCGGCaGUGGCC-C- -5'
10725 5' -60.3 NC_002794.1 + 118138 0.66 0.788478
Target:  5'- gGGaAGUCgGGGUGCa--CCGUCAUgGGGc -3'
miRNA:   3'- -CC-UCGG-CCCACGaacGGCAGUGgCCC- -5'
10725 5' -60.3 NC_002794.1 + 14573 0.66 0.788478
Target:  5'- cGAGCCGGccgaccgaaGCggGCCGUggcgagcgCGCCGGGc -3'
miRNA:   3'- cCUCGGCCca-------CGaaCGGCA--------GUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 56309 0.66 0.788478
Target:  5'- -cGGUCGcGGUcGCUggcgGCCGUgGCCGGc -3'
miRNA:   3'- ccUCGGC-CCA-CGAa---CGGCAgUGGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.