miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10725 5' -60.3 NC_002794.1 + 182553 0.68 0.706686
Target:  5'- --cGCCGcGGccgGCa--CCGUCACCGGGa -3'
miRNA:   3'- ccuCGGC-CCa--CGaacGGCAGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 115938 0.68 0.706686
Target:  5'- cGGGCCGGcccGCc-GCgUGUCGCCGGGg -3'
miRNA:   3'- cCUCGGCCca-CGaaCG-GCAGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 137013 0.68 0.716102
Target:  5'- aGGAGcCCGGGgaucagGUUcaggUGCuCGUCgAUCGGGa -3'
miRNA:   3'- -CCUC-GGCCCa-----CGA----ACG-GCAG-UGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 43866 0.68 0.725454
Target:  5'- cGGGGCaCGuagacGGUGagauacccgGCCGUCGCCGGc -3'
miRNA:   3'- -CCUCG-GC-----CCACgaa------CGGCAGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 68759 0.68 0.716102
Target:  5'- uGAGCCGGGcc---GCCGgggCGCCGGa -3'
miRNA:   3'- cCUCGGCCCacgaaCGGCa--GUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 94982 0.69 0.639623
Target:  5'- gGGGGCUGGaGcucugucgccGCUUGCUGUCGCUgauGGGg -3'
miRNA:   3'- -CCUCGGCC-Ca---------CGAACGGCAGUGG---CCC- -5'
10725 5' -60.3 NC_002794.1 + 128538 0.69 0.649275
Target:  5'- uGGAcgGUCGGGUGC--GCCGUCcuGCUGGu -3'
miRNA:   3'- -CCU--CGGCCCACGaaCGGCAG--UGGCCc -5'
10725 5' -60.3 NC_002794.1 + 81329 0.69 0.649275
Target:  5'- -aAGCCGcGGUacGCUccGCCGUCGCCGacGGg -3'
miRNA:   3'- ccUCGGC-CCA--CGAa-CGGCAGUGGC--CC- -5'
10725 5' -60.3 NC_002794.1 + 86478 0.69 0.658916
Target:  5'- cGAGCCGGGacggaUGCUccgGaCCGa-GCCGGGa -3'
miRNA:   3'- cCUCGGCCC-----ACGAa--C-GGCagUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 118261 0.7 0.558958
Target:  5'- aGGucGGCCGGGgcgGCggcGCCGgcgucggggaccgCGCCGGGc -3'
miRNA:   3'- -CC--UCGGCCCa--CGaa-CGGCa------------GUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 188272 0.7 0.570364
Target:  5'- cGGGCCGGGUaGCggaugcagggcGCCGcgCGCCGGa -3'
miRNA:   3'- cCUCGGCCCA-CGaa---------CGGCa-GUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 21592 0.7 0.573224
Target:  5'- cGGGGCgGucuGUGCccgugacccaccgcGCCGUCGCCGGGa -3'
miRNA:   3'- -CCUCGgCc--CACGaa------------CGGCAGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 142983 0.7 0.581825
Target:  5'- aGGGGCUGcGUGCccGCCGUgGCCaGGa -3'
miRNA:   3'- -CCUCGGCcCACGaaCGGCAgUGGcCC- -5'
10725 5' -60.3 NC_002794.1 + 141427 0.7 0.581825
Target:  5'- gGGGGCggCGGGgGC--GCCGggggCGCCGGGa -3'
miRNA:   3'- -CCUCG--GCCCaCGaaCGGCa---GUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 104301 0.7 0.608732
Target:  5'- cGGGCCGGGUGCacuugagguugGCCG-CGCaguaCGGGu -3'
miRNA:   3'- cCUCGGCCCACGaa---------CGGCaGUG----GCCC- -5'
10725 5' -60.3 NC_002794.1 + 107184 0.7 0.591412
Target:  5'- cGGAGCCGGc-GCc-GCCGcCGCCGGc -3'
miRNA:   3'- -CCUCGGCCcaCGaaCGGCaGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 72932 0.71 0.543853
Target:  5'- cGGAGCCGGcGUccGCgcGCC--CACCGGGc -3'
miRNA:   3'- -CCUCGGCC-CA--CGaaCGGcaGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 88747 0.71 0.53448
Target:  5'- cGGGGUCGccgaggaauguGGUGCcUGgCGUCGCCGGu -3'
miRNA:   3'- -CCUCGGC-----------CCACGaACgGCAGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 13776 0.71 0.553279
Target:  5'- cGGAGCCacccGGGUgGCUccgGCCGUCuucgcgaCGGGc -3'
miRNA:   3'- -CCUCGG----CCCA-CGAa--CGGCAGug-----GCCC- -5'
10725 5' -60.3 NC_002794.1 + 149498 0.71 0.543853
Target:  5'- cGGGGauGGGgaugGUgacgggGUCGUCGCCGGGa -3'
miRNA:   3'- -CCUCggCCCa---CGaa----CGGCAGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.