Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10725 | 5' | -60.3 | NC_002794.1 | + | 149498 | 0.71 | 0.543853 |
Target: 5'- cGGGGauGGGgaugGUgacgggGUCGUCGCCGGGa -3' miRNA: 3'- -CCUCggCCCa---CGaa----CGGCAGUGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 72932 | 0.71 | 0.543853 |
Target: 5'- cGGAGCCGGcGUccGCgcGCC--CACCGGGc -3' miRNA: 3'- -CCUCGGCC-CA--CGaaCGGcaGUGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 142983 | 0.7 | 0.581825 |
Target: 5'- aGGGGCUGcGUGCccGCCGUgGCCaGGa -3' miRNA: 3'- -CCUCGGCcCACGaaCGGCAgUGGcCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 188272 | 0.7 | 0.570364 |
Target: 5'- cGGGCCGGGUaGCggaugcagggcGCCGcgCGCCGGa -3' miRNA: 3'- cCUCGGCCCA-CGaa---------CGGCa-GUGGCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 118261 | 0.7 | 0.558958 |
Target: 5'- aGGucGGCCGGGgcgGCggcGCCGgcgucggggaccgCGCCGGGc -3' miRNA: 3'- -CC--UCGGCCCa--CGaa-CGGCa------------GUGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 141427 | 0.7 | 0.581825 |
Target: 5'- gGGGGCggCGGGgGC--GCCGggggCGCCGGGa -3' miRNA: 3'- -CCUCG--GCCCaCGaaCGGCa---GUGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 21592 | 0.7 | 0.573224 |
Target: 5'- cGGGGCgGucuGUGCccgugacccaccgcGCCGUCGCCGGGa -3' miRNA: 3'- -CCUCGgCc--CACGaa------------CGGCAGUGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 107184 | 0.7 | 0.591412 |
Target: 5'- cGGAGCCGGc-GCc-GCCGcCGCCGGc -3' miRNA: 3'- -CCUCGGCCcaCGaaCGGCaGUGGCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 104301 | 0.7 | 0.608732 |
Target: 5'- cGGGCCGGGUGCacuugagguugGCCG-CGCaguaCGGGu -3' miRNA: 3'- cCUCGGCCCACGaa---------CGGCaGUG----GCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 81329 | 0.69 | 0.649275 |
Target: 5'- -aAGCCGcGGUacGCUccGCCGUCGCCGacGGg -3' miRNA: 3'- ccUCGGC-CCA--CGAa-CGGCAGUGGC--CC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 86478 | 0.69 | 0.658916 |
Target: 5'- cGAGCCGGGacggaUGCUccgGaCCGa-GCCGGGa -3' miRNA: 3'- cCUCGGCCC-----ACGAa--C-GGCagUGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 128538 | 0.69 | 0.649275 |
Target: 5'- uGGAcgGUCGGGUGC--GCCGUCcuGCUGGu -3' miRNA: 3'- -CCU--CGGCCCACGaaCGGCAG--UGGCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 94982 | 0.69 | 0.639623 |
Target: 5'- gGGGGCUGGaGcucugucgccGCUUGCUGUCGCUgauGGGg -3' miRNA: 3'- -CCUCGGCC-Ca---------CGAACGGCAGUGG---CCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 182553 | 0.68 | 0.706686 |
Target: 5'- --cGCCGcGGccgGCa--CCGUCACCGGGa -3' miRNA: 3'- ccuCGGC-CCa--CGaacGGCAGUGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 115938 | 0.68 | 0.706686 |
Target: 5'- cGGGCCGGcccGCc-GCgUGUCGCCGGGg -3' miRNA: 3'- cCUCGGCCca-CGaaCG-GCAGUGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 137013 | 0.68 | 0.716102 |
Target: 5'- aGGAGcCCGGGgaucagGUUcaggUGCuCGUCgAUCGGGa -3' miRNA: 3'- -CCUC-GGCCCa-----CGA----ACG-GCAG-UGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 43866 | 0.68 | 0.725454 |
Target: 5'- cGGGGCaCGuagacGGUGagauacccgGCCGUCGCCGGc -3' miRNA: 3'- -CCUCG-GC-----CCACgaa------CGGCAGUGGCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 68759 | 0.68 | 0.716102 |
Target: 5'- uGAGCCGGGcc---GCCGgggCGCCGGa -3' miRNA: 3'- cCUCGGCCCacgaaCGGCa--GUGGCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 14634 | 0.68 | 0.697214 |
Target: 5'- cGGGGCCGGGcacgGagacGCCGgCGCCGcGGc -3' miRNA: 3'- -CCUCGGCCCa---Cgaa-CGGCaGUGGC-CC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 134002 | 0.68 | 0.697214 |
Target: 5'- cGGucGCCGGGUGCgagcGCUG-CACgguCGGGu -3' miRNA: 3'- -CCu-CGGCCCACGaa--CGGCaGUG---GCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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