Results 61 - 78 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10725 | 5' | -60.3 | NC_002794.1 | + | 118138 | 0.66 | 0.788478 |
Target: 5'- gGGaAGUCgGGGUGCa--CCGUCAUgGGGc -3' miRNA: 3'- -CC-UCGG-CCCACGaacGGCAGUGgCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 56309 | 0.66 | 0.788478 |
Target: 5'- -cGGUCGcGGUcGCUggcgGCCGUgGCCGGc -3' miRNA: 3'- ccUCGGC-CCA-CGAa---CGGCAgUGGCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 43635 | 0.66 | 0.797041 |
Target: 5'- aGGAGCUGGuGgaacacGCUgccGCCGaacgaGCCGGGc -3' miRNA: 3'- -CCUCGGCC-Ca-----CGAa--CGGCag---UGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 83421 | 0.66 | 0.797041 |
Target: 5'- cGGAuGCUGGccgGCaaGCCgGUCACCGGc -3' miRNA: 3'- -CCU-CGGCCca-CGaaCGG-CAGUGGCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 86760 | 0.66 | 0.797041 |
Target: 5'- -aAGCCGGGUGgaUcGCCGggaacgaACCGGc -3' miRNA: 3'- ccUCGGCCCACgaA-CGGCag-----UGGCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 87056 | 0.66 | 0.805471 |
Target: 5'- cGGGGCCGGGUccuguaGCgacaGCaCGgugCagGCCGGGc -3' miRNA: 3'- -CCUCGGCCCA------CGaa--CG-GCa--G--UGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 181903 | 0.66 | 0.811289 |
Target: 5'- -cAGCgCGGGUcguacaccacccgcGCgacgGCCGUCucCCGGGa -3' miRNA: 3'- ccUCG-GCCCA--------------CGaa--CGGCAGu-GGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 5790 | 0.66 | 0.813761 |
Target: 5'- aGAGCCGGG-GUcUGaCCGUCGgugagaccCCGGu -3' miRNA: 3'- cCUCGGCCCaCGaAC-GGCAGU--------GGCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 95824 | 0.66 | 0.813761 |
Target: 5'- cGGcGGCCGGGggaGCggcgGCgGcgGCCGGGg -3' miRNA: 3'- -CC-UCGGCCCa--CGaa--CGgCagUGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 147165 | 0.66 | 0.818665 |
Target: 5'- gGGccAGCUGGaccgacugaacguGUGCgagugguugaacucUUGCCGUCggGCCGGGg -3' miRNA: 3'- -CC--UCGGCC-------------CACG--------------AACGGCAG--UGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 92308 | 0.66 | 0.821905 |
Target: 5'- cGGGGCUGGGcGCgggcgGCgGgggC-CCGGGc -3' miRNA: 3'- -CCUCGGCCCaCGaa---CGgCa--GuGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 148126 | 0.66 | 0.821905 |
Target: 5'- cGGuGUCGGGcGCgggGCC---GCCGGGg -3' miRNA: 3'- -CCuCGGCCCaCGaa-CGGcagUGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 142021 | 0.66 | 0.821905 |
Target: 5'- --uGCCGgaGGUGCUUcGCCuGUCGCgGGa -3' miRNA: 3'- ccuCGGC--CCACGAA-CGG-CAGUGgCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 105998 | 0.66 | 0.829894 |
Target: 5'- cGAGCCGaugcugccccGcGUGUacgagauuaugUUGCCGUCGCUGGa -3' miRNA: 3'- cCUCGGC----------C-CACG-----------AACGGCAGUGGCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 11261 | 0.66 | 0.829894 |
Target: 5'- aGGGGUCGGGcGac-GCgGUCACCuGGu -3' miRNA: 3'- -CCUCGGCCCaCgaaCGgCAGUGGcCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 108355 | 0.66 | 0.829894 |
Target: 5'- cGGAGCgGGGaGCggaggagGaCCGggCGCCGGa -3' miRNA: 3'- -CCUCGgCCCaCGaa-----C-GGCa-GUGGCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 36008 | 0.66 | 0.837724 |
Target: 5'- cGGGGCuCGGGcgGCggaauccGCCGUCcggcCCGGc -3' miRNA: 3'- -CCUCG-GCCCa-CGaa-----CGGCAGu---GGCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 144359 | 0.66 | 0.837724 |
Target: 5'- cGGAGCCGGc----UGCCGUUcuacucCCGGGu -3' miRNA: 3'- -CCUCGGCCcacgaACGGCAGu-----GGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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