miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10725 5' -60.3 NC_002794.1 + 86190 0.67 0.77979
Target:  5'- cGAGCCGGGacggaUGCUccggGCCGcgCccgACCGGa -3'
miRNA:   3'- cCUCGGCCC-----ACGAa---CGGCa-G---UGGCCc -5'
10725 5' -60.3 NC_002794.1 + 99263 0.67 0.77979
Target:  5'- aGGGGCuCGGGgGCUccgGCgCGcUC-CCGGGc -3'
miRNA:   3'- -CCUCG-GCCCaCGAa--CG-GC-AGuGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 86382 0.67 0.77979
Target:  5'- cGAGCCGGGacggaUGCUccggGCCGcgCccgACCGGa -3'
miRNA:   3'- cCUCGGCCC-----ACGAa---CGGCa-G---UGGCCc -5'
10725 5' -60.3 NC_002794.1 + 86334 0.67 0.77979
Target:  5'- cGAGCCGGGacggaUGCUccggGCCGcgCccgACCGGa -3'
miRNA:   3'- cCUCGGCCC-----ACGAa---CGGCa-G---UGGCCc -5'
10725 5' -60.3 NC_002794.1 + 86550 0.67 0.77979
Target:  5'- cGAGCCGGGacggaUGCUccggGCCGcgCccgACCGGa -3'
miRNA:   3'- cCUCGGCCC-----ACGAa---CGGCa-G---UGGCCc -5'
10725 5' -60.3 NC_002794.1 + 110425 0.67 0.770984
Target:  5'- -aAGCCGGGcgGC-UGUCGUCGUCGGu -3'
miRNA:   3'- ccUCGGCCCa-CGaACGGCAGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 40546 0.67 0.770984
Target:  5'- gGGGGCCGGcGgcaugaGCUUcucguucgcGCCGUCcugGCCGcGGg -3'
miRNA:   3'- -CCUCGGCC-Ca-----CGAA---------CGGCAG---UGGC-CC- -5'
10725 5' -60.3 NC_002794.1 + 121997 0.67 0.770984
Target:  5'- -cGGCCGGGaGCUguuccacGUCGUCuucuucggcGCCGGGc -3'
miRNA:   3'- ccUCGGCCCaCGAa------CGGCAG---------UGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 114745 0.67 0.762067
Target:  5'- cGAGCCGGcGccGCccGCCGgCGCCGGu -3'
miRNA:   3'- cCUCGGCC-Ca-CGaaCGGCaGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 127512 0.67 0.753049
Target:  5'- aGGAGCUGGG-GCUgUGCCGcCGCg--- -3'
miRNA:   3'- -CCUCGGCCCaCGA-ACGGCaGUGgccc -5'
10725 5' -60.3 NC_002794.1 + 192378 0.67 0.753049
Target:  5'- cGAGCgCGGGcUGaccgccaccGCCG-CGCCGGGg -3'
miRNA:   3'- cCUCG-GCCC-ACgaa------CGGCaGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 76788 0.67 0.753049
Target:  5'- cGAGCCGGGcggGCgaGCgGcgacCACCGGa -3'
miRNA:   3'- cCUCGGCCCa--CGaaCGgCa---GUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 186032 0.67 0.743935
Target:  5'- cGGAcCCGGGccccgGCUgGCCGUCGuuccCCGGu -3'
miRNA:   3'- -CCUcGGCCCa----CGAaCGGCAGU----GGCCc -5'
10725 5' -60.3 NC_002794.1 + 110147 0.67 0.743935
Target:  5'- cGGAGagaGGGUGagcacGUCGUCGCgGGGc -3'
miRNA:   3'- -CCUCgg-CCCACgaa--CGGCAGUGgCCC- -5'
10725 5' -60.3 NC_002794.1 + 130616 0.67 0.734734
Target:  5'- uGGGCCGguugacGGUGUUcGgCGUCGCCGGc -3'
miRNA:   3'- cCUCGGC------CCACGAaCgGCAGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 43866 0.68 0.725454
Target:  5'- cGGGGCaCGuagacGGUGagauacccgGCCGUCGCCGGc -3'
miRNA:   3'- -CCUCG-GC-----CCACgaa------CGGCAGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 68759 0.68 0.716102
Target:  5'- uGAGCCGGGcc---GCCGgggCGCCGGa -3'
miRNA:   3'- cCUCGGCCCacgaaCGGCa--GUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 137013 0.68 0.716102
Target:  5'- aGGAGcCCGGGgaucagGUUcaggUGCuCGUCgAUCGGGa -3'
miRNA:   3'- -CCUC-GGCCCa-----CGA----ACG-GCAG-UGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 182553 0.68 0.706686
Target:  5'- --cGCCGcGGccgGCa--CCGUCACCGGGa -3'
miRNA:   3'- ccuCGGC-CCa--CGaacGGCAGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 181546 0.68 0.706686
Target:  5'- cGGGCCGGc-GCUcuCgGUCGCCGGGc -3'
miRNA:   3'- cCUCGGCCcaCGAacGgCAGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.