miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10725 5' -60.3 NC_002794.1 + 733 0.72 0.488567
Target:  5'- gGGGGCucuguuuucgCGGG-GCUcUGCCGUUuuGCCGGGc -3'
miRNA:   3'- -CCUCG----------GCCCaCGA-ACGGCAG--UGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 895 0.68 0.697214
Target:  5'- cGGGCCGGGUGCcaacGCCGcUCcCCGc- -3'
miRNA:   3'- cCUCGGCCCACGaa--CGGC-AGuGGCcc -5'
10725 5' -60.3 NC_002794.1 + 5790 0.66 0.813761
Target:  5'- aGAGCCGGG-GUcUGaCCGUCGgugagaccCCGGu -3'
miRNA:   3'- cCUCGGCCCaCGaAC-GGCAGU--------GGCCc -5'
10725 5' -60.3 NC_002794.1 + 11261 0.66 0.829894
Target:  5'- aGGGGUCGGGcGac-GCgGUCACCuGGu -3'
miRNA:   3'- -CCUCGGCCCaCgaaCGgCAGUGGcCC- -5'
10725 5' -60.3 NC_002794.1 + 13776 0.71 0.553279
Target:  5'- cGGAGCCacccGGGUgGCUccgGCCGUCuucgcgaCGGGc -3'
miRNA:   3'- -CCUCGG----CCCA-CGAa--CGGCAGug-----GCCC- -5'
10725 5' -60.3 NC_002794.1 + 14573 0.66 0.788478
Target:  5'- cGAGCCGGccgaccgaaGCggGCCGUggcgagcgCGCCGGGc -3'
miRNA:   3'- cCUCGGCCca-------CGaaCGGCA--------GUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 14634 0.68 0.697214
Target:  5'- cGGGGCCGGGcacgGagacGCCGgCGCCGcGGc -3'
miRNA:   3'- -CCUCGGCCCa---Cgaa-CGGCaGUGGC-CC- -5'
10725 5' -60.3 NC_002794.1 + 21592 0.7 0.573224
Target:  5'- cGGGGCgGucuGUGCccgugacccaccgcGCCGUCGCCGGGa -3'
miRNA:   3'- -CCUCGgCc--CACGaa------------CGGCAGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 32592 0.81 0.149939
Target:  5'- cGGGGCCGGG-GCcgggGCCGggGCCGGGg -3'
miRNA:   3'- -CCUCGGCCCaCGaa--CGGCagUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 36008 0.66 0.837724
Target:  5'- cGGGGCuCGGGcgGCggaauccGCCGUCcggcCCGGc -3'
miRNA:   3'- -CCUCG-GCCCa-CGaa-----CGGCAGu---GGCCc -5'
10725 5' -60.3 NC_002794.1 + 40546 0.67 0.770984
Target:  5'- gGGGGCCGGcGgcaugaGCUUcucguucgcGCCGUCcugGCCGcGGg -3'
miRNA:   3'- -CCUCGGCC-Ca-----CGAA---------CGGCAG---UGGC-CC- -5'
10725 5' -60.3 NC_002794.1 + 43635 0.66 0.797041
Target:  5'- aGGAGCUGGuGgaacacGCUgccGCCGaacgaGCCGGGc -3'
miRNA:   3'- -CCUCGGCC-Ca-----CGAa--CGGCag---UGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 43866 0.68 0.725454
Target:  5'- cGGGGCaCGuagacGGUGagauacccgGCCGUCGCCGGc -3'
miRNA:   3'- -CCUCG-GC-----CCACgaa------CGGCAGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 44238 0.75 0.31363
Target:  5'- cGGuGCCGGGcgGCUcggUGCCGggcggcucggcCGCCGGGg -3'
miRNA:   3'- -CCuCGGCCCa-CGA---ACGGCa----------GUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 46312 0.68 0.697214
Target:  5'- cGAGCgCGGcG-GCgacggcGCCGUCGCCGcGGa -3'
miRNA:   3'- cCUCG-GCC-CaCGaa----CGGCAGUGGC-CC- -5'
10725 5' -60.3 NC_002794.1 + 50588 0.73 0.436062
Target:  5'- cGGcGGCUGGGUG---GCCGgCGCCGGGg -3'
miRNA:   3'- -CC-UCGGCCCACgaaCGGCaGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 56309 0.66 0.788478
Target:  5'- -cGGUCGcGGUcGCUggcgGCCGUgGCCGGc -3'
miRNA:   3'- ccUCGGC-CCA-CGAa---CGGCAgUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 68759 0.68 0.716102
Target:  5'- uGAGCCGGGcc---GCCGgggCGCCGGa -3'
miRNA:   3'- cCUCGGCCCacgaaCGGCa--GUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 72932 0.71 0.543853
Target:  5'- cGGAGCCGGcGUccGCgcGCC--CACCGGGc -3'
miRNA:   3'- -CCUCGGCC-CA--CGaaCGGcaGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 76788 0.67 0.753049
Target:  5'- cGAGCCGGGcggGCgaGCgGcgacCACCGGa -3'
miRNA:   3'- cCUCGGCCCa--CGaaCGgCa---GUGGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.