miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10725 5' -60.3 NC_002794.1 + 80421 0.66 0.788478
Target:  5'- uGGcGCCGGGcGgg-GCCGcCGCCGGcGg -3'
miRNA:   3'- -CCuCGGCCCaCgaaCGGCaGUGGCC-C- -5'
10725 5' -60.3 NC_002794.1 + 81329 0.69 0.649275
Target:  5'- -aAGCCGcGGUacGCUccGCCGUCGCCGacGGg -3'
miRNA:   3'- ccUCGGC-CCA--CGAa-CGGCAGUGGC--CC- -5'
10725 5' -60.3 NC_002794.1 + 83421 0.66 0.797041
Target:  5'- cGGAuGCUGGccgGCaaGCCgGUCACCGGc -3'
miRNA:   3'- -CCU-CGGCCca-CGaaCGG-CAGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 86190 0.67 0.77979
Target:  5'- cGAGCCGGGacggaUGCUccggGCCGcgCccgACCGGa -3'
miRNA:   3'- cCUCGGCCC-----ACGAa---CGGCa-G---UGGCCc -5'
10725 5' -60.3 NC_002794.1 + 86334 0.67 0.77979
Target:  5'- cGAGCCGGGacggaUGCUccggGCCGcgCccgACCGGa -3'
miRNA:   3'- cCUCGGCCC-----ACGAa---CGGCa-G---UGGCCc -5'
10725 5' -60.3 NC_002794.1 + 86382 0.67 0.77979
Target:  5'- cGAGCCGGGacggaUGCUccggGCCGcgCccgACCGGa -3'
miRNA:   3'- cCUCGGCCC-----ACGAa---CGGCa-G---UGGCCc -5'
10725 5' -60.3 NC_002794.1 + 86478 0.69 0.658916
Target:  5'- cGAGCCGGGacggaUGCUccgGaCCGa-GCCGGGa -3'
miRNA:   3'- cCUCGGCCC-----ACGAa--C-GGCagUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 86550 0.67 0.77979
Target:  5'- cGAGCCGGGacggaUGCUccggGCCGcgCccgACCGGa -3'
miRNA:   3'- cCUCGGCCC-----ACGAa---CGGCa-G---UGGCCc -5'
10725 5' -60.3 NC_002794.1 + 86760 0.66 0.797041
Target:  5'- -aAGCCGGGUGgaUcGCCGggaacgaACCGGc -3'
miRNA:   3'- ccUCGGCCCACgaA-CGGCag-----UGGCCc -5'
10725 5' -60.3 NC_002794.1 + 87056 0.66 0.805471
Target:  5'- cGGGGCCGGGUccuguaGCgacaGCaCGgugCagGCCGGGc -3'
miRNA:   3'- -CCUCGGCCCA------CGaa--CG-GCa--G--UGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 88747 0.71 0.53448
Target:  5'- cGGGGUCGccgaggaauguGGUGCcUGgCGUCGCCGGu -3'
miRNA:   3'- -CCUCGGC-----------CCACGaACgGCAGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 90379 0.73 0.411057
Target:  5'- aGGGCCGGGU-CUcGCCGUCcgcgAUCGGGc -3'
miRNA:   3'- cCUCGGCCCAcGAaCGGCAG----UGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 92308 0.66 0.821905
Target:  5'- cGGGGCUGGGcGCgggcgGCgGgggC-CCGGGc -3'
miRNA:   3'- -CCUCGGCCCaCGaa---CGgCa--GuGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 94982 0.69 0.639623
Target:  5'- gGGGGCUGGaGcucugucgccGCUUGCUGUCGCUgauGGGg -3'
miRNA:   3'- -CCUCGGCC-Ca---------CGAACGGCAGUGG---CCC- -5'
10725 5' -60.3 NC_002794.1 + 95824 0.66 0.813761
Target:  5'- cGGcGGCCGGGggaGCggcgGCgGcgGCCGGGg -3'
miRNA:   3'- -CC-UCGGCCCa--CGaa--CGgCagUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 98948 0.73 0.419293
Target:  5'- aGGGGCUGGGgcucgUGCUgggcGCCGUCGgCGGc -3'
miRNA:   3'- -CCUCGGCCC-----ACGAa---CGGCAGUgGCCc -5'
10725 5' -60.3 NC_002794.1 + 99263 0.67 0.77979
Target:  5'- aGGGGCuCGGGgGCUccgGCgCGcUC-CCGGGc -3'
miRNA:   3'- -CCUCG-GCCCaCGAa--CG-GC-AGuGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 100818 0.72 0.488567
Target:  5'- cGuGCCGGGcgGCggggGCCGgcaGCCGGGc -3'
miRNA:   3'- cCuCGGCCCa-CGaa--CGGCag-UGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 101591 0.78 0.224178
Target:  5'- -cGGCCGGGgggGCgggUGCCGgccCGCCGGGc -3'
miRNA:   3'- ccUCGGCCCa--CGa--ACGGCa--GUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 104301 0.7 0.608732
Target:  5'- cGGGCCGGGUGCacuugagguugGCCG-CGCaguaCGGGu -3'
miRNA:   3'- cCUCGGCCCACGaa---------CGGCaGUG----GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.