miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10725 5' -60.3 NC_002794.1 + 192378 0.67 0.753049
Target:  5'- cGAGCgCGGGcUGaccgccaccGCCG-CGCCGGGg -3'
miRNA:   3'- cCUCG-GCCC-ACgaa------CGGCaGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 188272 0.7 0.570364
Target:  5'- cGGGCCGGGUaGCggaugcagggcGCCGcgCGCCGGa -3'
miRNA:   3'- cCUCGGCCCA-CGaa---------CGGCa-GUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 186092 0.73 0.402922
Target:  5'- --cGCCGGGcGCUUcgucgccgucGCCGcCGCCGGGu -3'
miRNA:   3'- ccuCGGCCCaCGAA----------CGGCaGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 186032 0.67 0.743935
Target:  5'- cGGAcCCGGGccccgGCUgGCCGUCGuuccCCGGu -3'
miRNA:   3'- -CCUcGGCCCa----CGAaCGGCAGU----GGCCc -5'
10725 5' -60.3 NC_002794.1 + 182553 0.68 0.706686
Target:  5'- --cGCCGcGGccgGCa--CCGUCACCGGGa -3'
miRNA:   3'- ccuCGGC-CCa--CGaacGGCAGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 181903 0.66 0.811289
Target:  5'- -cAGCgCGGGUcguacaccacccgcGCgacgGCCGUCucCCGGGa -3'
miRNA:   3'- ccUCG-GCCCA--------------CGaa--CGGCAGu-GGCCC- -5'
10725 5' -60.3 NC_002794.1 + 181546 0.68 0.706686
Target:  5'- cGGGCCGGc-GCUcuCgGUCGCCGGGc -3'
miRNA:   3'- cCUCGGCCcaCGAacGgCAGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 155923 1.13 0.00105
Target:  5'- cGGAGCCGGGUGCUUGCCGUCACCGGGg -3'
miRNA:   3'- -CCUCGGCCCACGAACGGCAGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 149498 0.71 0.543853
Target:  5'- cGGGGauGGGgaugGUgacgggGUCGUCGCCGGGa -3'
miRNA:   3'- -CCUCggCCCa---CGaa----CGGCAGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 149215 0.74 0.394889
Target:  5'- cGGcuGGCCGGaagcgagGCgccgccGCCGUCGCCGGGg -3'
miRNA:   3'- -CC--UCGGCCca-----CGaa----CGGCAGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 148126 0.66 0.821905
Target:  5'- cGGuGUCGGGcGCgggGCC---GCCGGGg -3'
miRNA:   3'- -CCuCGGCCCaCGaa-CGGcagUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 147165 0.66 0.818665
Target:  5'- gGGccAGCUGGaccgacugaacguGUGCgagugguugaacucUUGCCGUCggGCCGGGg -3'
miRNA:   3'- -CC--UCGGCC-------------CACG--------------AACGGCAG--UGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 145356 0.74 0.356315
Target:  5'- cGAGCUGGGgg--UGUgGUCACCGGGc -3'
miRNA:   3'- cCUCGGCCCacgaACGgCAGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 144359 0.66 0.837724
Target:  5'- cGGAGCCGGc----UGCCGUUcuacucCCGGGu -3'
miRNA:   3'- -CCUCGGCCcacgaACGGCAGu-----GGCCC- -5'
10725 5' -60.3 NC_002794.1 + 142983 0.7 0.581825
Target:  5'- aGGGGCUGcGUGCccGCCGUgGCCaGGa -3'
miRNA:   3'- -CCUCGGCcCACGaaCGGCAgUGGcCC- -5'
10725 5' -60.3 NC_002794.1 + 142021 0.66 0.821905
Target:  5'- --uGCCGgaGGUGCUUcGCCuGUCGCgGGa -3'
miRNA:   3'- ccuCGGC--CCACGAA-CGG-CAGUGgCCc -5'
10725 5' -60.3 NC_002794.1 + 141427 0.7 0.581825
Target:  5'- gGGGGCggCGGGgGC--GCCGggggCGCCGGGa -3'
miRNA:   3'- -CCUCG--GCCCaCGaaCGGCa---GUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 137583 0.79 0.190403
Target:  5'- cGGGGCCGGaGUGCggggaGCCGcCGCCGGcGg -3'
miRNA:   3'- -CCUCGGCC-CACGaa---CGGCaGUGGCC-C- -5'
10725 5' -60.3 NC_002794.1 + 137013 0.68 0.716102
Target:  5'- aGGAGcCCGGGgaucagGUUcaggUGCuCGUCgAUCGGGa -3'
miRNA:   3'- -CCUC-GGCCCa-----CGA----ACG-GCAG-UGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 134002 0.68 0.697214
Target:  5'- cGGucGCCGGGUGCgagcGCUG-CACgguCGGGu -3'
miRNA:   3'- -CCu-CGGCCCACGaa--CGGCaGUG---GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.