miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10725 5' -60.3 NC_002794.1 + 132577 0.75 0.341644
Target:  5'- aGGA-CCGGGUGg--GCCGcuUCACCGGGc -3'
miRNA:   3'- -CCUcGGCCCACgaaCGGC--AGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 130616 0.67 0.734734
Target:  5'- uGGGCCGguugacGGUGUUcGgCGUCGCCGGc -3'
miRNA:   3'- cCUCGGC------CCACGAaCgGCAGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 128538 0.69 0.649275
Target:  5'- uGGAcgGUCGGGUGC--GCCGUCcuGCUGGu -3'
miRNA:   3'- -CCU--CGGCCCACGaaCGGCAG--UGGCCc -5'
10725 5' -60.3 NC_002794.1 + 127512 0.67 0.753049
Target:  5'- aGGAGCUGGG-GCUgUGCCGcCGCg--- -3'
miRNA:   3'- -CCUCGGCCCaCGA-ACGGCaGUGgccc -5'
10725 5' -60.3 NC_002794.1 + 121997 0.67 0.770984
Target:  5'- -cGGCCGGGaGCUguuccacGUCGUCuucuucggcGCCGGGc -3'
miRNA:   3'- ccUCGGCCCaCGAa------CGGCAG---------UGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 121404 0.77 0.262908
Target:  5'- cGGcGCCGGGaccGCga-CCGUCGCCGGGa -3'
miRNA:   3'- -CCuCGGCCCa--CGaacGGCAGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 119521 0.72 0.469837
Target:  5'- cGGAGCCGGccgcggaccccucGUcCgcgGCCGUCGCCGGc -3'
miRNA:   3'- -CCUCGGCC-------------CAcGaa-CGGCAGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 118261 0.7 0.558958
Target:  5'- aGGucGGCCGGGgcgGCggcGCCGgcgucggggaccgCGCCGGGc -3'
miRNA:   3'- -CC--UCGGCCCa--CGaa-CGGCa------------GUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 118138 0.66 0.788478
Target:  5'- gGGaAGUCgGGGUGCa--CCGUCAUgGGGc -3'
miRNA:   3'- -CC-UCGG-CCCACGaacGGCAGUGgCCC- -5'
10725 5' -60.3 NC_002794.1 + 116070 0.72 0.501247
Target:  5'- uGGGGUCGcGGaGCgcucggcgcggcgGUCGUCGCCGGGg -3'
miRNA:   3'- -CCUCGGC-CCaCGaa-----------CGGCAGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 115938 0.68 0.706686
Target:  5'- cGGGCCGGcccGCc-GCgUGUCGCCGGGg -3'
miRNA:   3'- cCUCGGCCca-CGaaCG-GCAGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 114745 0.67 0.762067
Target:  5'- cGAGCCGGcGccGCccGCCGgCGCCGGu -3'
miRNA:   3'- cCUCGGCC-Ca-CGaaCGGCaGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 110425 0.67 0.770984
Target:  5'- -aAGCCGGGcgGC-UGUCGUCGUCGGu -3'
miRNA:   3'- ccUCGGCCCa-CGaACGGCAGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 110147 0.67 0.743935
Target:  5'- cGGAGagaGGGUGagcacGUCGUCGCgGGGc -3'
miRNA:   3'- -CCUCgg-CCCACgaa--CGGCAGUGgCCC- -5'
10725 5' -60.3 NC_002794.1 + 108848 0.73 0.411057
Target:  5'- cGAaCCGGGUGUguuggcgcGCgGUCACCGGGu -3'
miRNA:   3'- cCUcGGCCCACGaa------CGgCAGUGGCCC- -5'
10725 5' -60.3 NC_002794.1 + 108355 0.66 0.829894
Target:  5'- cGGAGCgGGGaGCggaggagGaCCGggCGCCGGa -3'
miRNA:   3'- -CCUCGgCCCaCGaa-----C-GGCa-GUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 107184 0.7 0.591412
Target:  5'- cGGAGCCGGc-GCc-GCCGcCGCCGGc -3'
miRNA:   3'- -CCUCGGCCcaCGaaCGGCaGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 105998 0.66 0.829894
Target:  5'- cGAGCCGaugcugccccGcGUGUacgagauuaugUUGCCGUCGCUGGa -3'
miRNA:   3'- cCUCGGC----------C-CACG-----------AACGGCAGUGGCCc -5'
10725 5' -60.3 NC_002794.1 + 104301 0.7 0.608732
Target:  5'- cGGGCCGGGUGCacuugagguugGCCG-CGCaguaCGGGu -3'
miRNA:   3'- cCUCGGCCCACGaa---------CGGCaGUG----GCCC- -5'
10725 5' -60.3 NC_002794.1 + 101591 0.78 0.224178
Target:  5'- -cGGCCGGGgggGCgggUGCCGgccCGCCGGGc -3'
miRNA:   3'- ccUCGGCCCa--CGa--ACGGCa--GUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.