Results 61 - 78 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10725 | 5' | -60.3 | NC_002794.1 | + | 68759 | 0.68 | 0.716102 |
Target: 5'- uGAGCCGGGcc---GCCGgggCGCCGGa -3' miRNA: 3'- cCUCGGCCCacgaaCGGCa--GUGGCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 56309 | 0.66 | 0.788478 |
Target: 5'- -cGGUCGcGGUcGCUggcgGCCGUgGCCGGc -3' miRNA: 3'- ccUCGGC-CCA-CGAa---CGGCAgUGGCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 50588 | 0.73 | 0.436062 |
Target: 5'- cGGcGGCUGGGUG---GCCGgCGCCGGGg -3' miRNA: 3'- -CC-UCGGCCCACgaaCGGCaGUGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 46312 | 0.68 | 0.697214 |
Target: 5'- cGAGCgCGGcG-GCgacggcGCCGUCGCCGcGGa -3' miRNA: 3'- cCUCG-GCC-CaCGaa----CGGCAGUGGC-CC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 44238 | 0.75 | 0.31363 |
Target: 5'- cGGuGCCGGGcgGCUcggUGCCGggcggcucggcCGCCGGGg -3' miRNA: 3'- -CCuCGGCCCa-CGA---ACGGCa----------GUGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 43866 | 0.68 | 0.725454 |
Target: 5'- cGGGGCaCGuagacGGUGagauacccgGCCGUCGCCGGc -3' miRNA: 3'- -CCUCG-GC-----CCACgaa------CGGCAGUGGCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 43635 | 0.66 | 0.797041 |
Target: 5'- aGGAGCUGGuGgaacacGCUgccGCCGaacgaGCCGGGc -3' miRNA: 3'- -CCUCGGCC-Ca-----CGAa--CGGCag---UGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 40546 | 0.67 | 0.770984 |
Target: 5'- gGGGGCCGGcGgcaugaGCUUcucguucgcGCCGUCcugGCCGcGGg -3' miRNA: 3'- -CCUCGGCC-Ca-----CGAA---------CGGCAG---UGGC-CC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 36008 | 0.66 | 0.837724 |
Target: 5'- cGGGGCuCGGGcgGCggaauccGCCGUCcggcCCGGc -3' miRNA: 3'- -CCUCG-GCCCa-CGaa-----CGGCAGu---GGCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 32592 | 0.81 | 0.149939 |
Target: 5'- cGGGGCCGGG-GCcgggGCCGggGCCGGGg -3' miRNA: 3'- -CCUCGGCCCaCGaa--CGGCagUGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 21592 | 0.7 | 0.573224 |
Target: 5'- cGGGGCgGucuGUGCccgugacccaccgcGCCGUCGCCGGGa -3' miRNA: 3'- -CCUCGgCc--CACGaa------------CGGCAGUGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 14634 | 0.68 | 0.697214 |
Target: 5'- cGGGGCCGGGcacgGagacGCCGgCGCCGcGGc -3' miRNA: 3'- -CCUCGGCCCa---Cgaa-CGGCaGUGGC-CC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 14573 | 0.66 | 0.788478 |
Target: 5'- cGAGCCGGccgaccgaaGCggGCCGUggcgagcgCGCCGGGc -3' miRNA: 3'- cCUCGGCCca-------CGaaCGGCA--------GUGGCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 13776 | 0.71 | 0.553279 |
Target: 5'- cGGAGCCacccGGGUgGCUccgGCCGUCuucgcgaCGGGc -3' miRNA: 3'- -CCUCGG----CCCA-CGAa--CGGCAGug-----GCCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 11261 | 0.66 | 0.829894 |
Target: 5'- aGGGGUCGGGcGac-GCgGUCACCuGGu -3' miRNA: 3'- -CCUCGGCCCaCgaaCGgCAGUGGcCC- -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 5790 | 0.66 | 0.813761 |
Target: 5'- aGAGCCGGG-GUcUGaCCGUCGgugagaccCCGGu -3' miRNA: 3'- cCUCGGCCCaCGaAC-GGCAGU--------GGCCc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 895 | 0.68 | 0.697214 |
Target: 5'- cGGGCCGGGUGCcaacGCCGcUCcCCGc- -3' miRNA: 3'- cCUCGGCCCACGaa--CGGC-AGuGGCcc -5' |
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10725 | 5' | -60.3 | NC_002794.1 | + | 733 | 0.72 | 0.488567 |
Target: 5'- gGGGGCucuguuuucgCGGG-GCUcUGCCGUUuuGCCGGGc -3' miRNA: 3'- -CCUCG----------GCCCaCGA-ACGGCAG--UGGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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