miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10726 3' -57.2 NC_002794.1 + 12222 0.66 0.925195
Target:  5'- cGGcGUCGGCGGCGccggCGGcGCcGUCcGCg -3'
miRNA:   3'- -CC-UAGCCGCCGCua--GUC-CGcCAGaUG- -5'
10726 3' -57.2 NC_002794.1 + 147005 0.66 0.919851
Target:  5'- -cGUCGGCGGCGGcggccgCcGGCgcucGGUCUAa -3'
miRNA:   3'- ccUAGCCGCCGCUa-----GuCCG----CCAGAUg -5'
10726 3' -57.2 NC_002794.1 + 86025 0.66 0.919851
Target:  5'- cGAcCGuGCGGCGGacaggccucaUCGGGCcgGGUCUAa -3'
miRNA:   3'- cCUaGC-CGCCGCU----------AGUCCG--CCAGAUg -5'
10726 3' -57.2 NC_002794.1 + 105772 0.66 0.913715
Target:  5'- gGGGUCGGUGGgccgcguCGAU-AGGuCGGUCUc- -3'
miRNA:   3'- -CCUAGCCGCC-------GCUAgUCC-GCCAGAug -5'
10726 3' -57.2 NC_002794.1 + 142953 0.66 0.908493
Target:  5'- gGGAagUCGGCGGCGucgagcuccucGUCgAGG-GG-CUGCg -3'
miRNA:   3'- -CCU--AGCCGCCGC-----------UAG-UCCgCCaGAUG- -5'
10726 3' -57.2 NC_002794.1 + 37754 0.66 0.908493
Target:  5'- cGGcgCGGCGGCGcc--GGCGGga-GCg -3'
miRNA:   3'- -CCuaGCCGCCGCuaguCCGCCagaUG- -5'
10726 3' -57.2 NC_002794.1 + 98628 0.66 0.908493
Target:  5'- aGAUCuucGUGGCGGggaAGGUGGcCUACg -3'
miRNA:   3'- cCUAGc--CGCCGCUag-UCCGCCaGAUG- -5'
10726 3' -57.2 NC_002794.1 + 191938 0.66 0.908493
Target:  5'- aGGAUCGGCGGCGAguccUCcGaCGG-CUc- -3'
miRNA:   3'- -CCUAGCCGCCGCU----AGuCcGCCaGAug -5'
10726 3' -57.2 NC_002794.1 + 54076 0.66 0.908493
Target:  5'- aGGAugUUGGCGuuGCGAccCAGGUGGUCc-- -3'
miRNA:   3'- -CCU--AGCCGC--CGCUa-GUCCGCCAGaug -5'
10726 3' -57.2 NC_002794.1 + 37268 0.66 0.902481
Target:  5'- -cGUCGGCgGGCGcgCGGGCGcGgcgUACa -3'
miRNA:   3'- ccUAGCCG-CCGCuaGUCCGC-Cag-AUG- -5'
10726 3' -57.2 NC_002794.1 + 86997 0.66 0.902481
Target:  5'- cGGcuuUCGGCGGCGuggguUCcGGCgagGGUCcGCa -3'
miRNA:   3'- -CCu--AGCCGCCGCu----AGuCCG---CCAGaUG- -5'
10726 3' -57.2 NC_002794.1 + 55208 0.66 0.902481
Target:  5'- cGGcgCGGCGGaGG-CcGGCGGUCg-- -3'
miRNA:   3'- -CCuaGCCGCCgCUaGuCCGCCAGaug -5'
10726 3' -57.2 NC_002794.1 + 32874 0.66 0.89625
Target:  5'- cGGG-CGGCGGCGG-C-GGCGG-CgGCa -3'
miRNA:   3'- -CCUaGCCGCCGCUaGuCCGCCaGaUG- -5'
10726 3' -57.2 NC_002794.1 + 135360 0.66 0.89625
Target:  5'- aGAUccCGGUGGUGAggGGGuCGGUUUAUa -3'
miRNA:   3'- cCUA--GCCGCCGCUagUCC-GCCAGAUG- -5'
10726 3' -57.2 NC_002794.1 + 148138 0.67 0.889802
Target:  5'- cGGGgccgcCGG-GGCGA--GGGCGGUCgcgACg -3'
miRNA:   3'- -CCUa----GCCgCCGCUagUCCGCCAGa--UG- -5'
10726 3' -57.2 NC_002794.1 + 186280 0.67 0.889802
Target:  5'- uGGcgCGGCGGCaccgcGGcCAGGCGGcCg-- -3'
miRNA:   3'- -CCuaGCCGCCG-----CUaGUCCGCCaGaug -5'
10726 3' -57.2 NC_002794.1 + 117197 0.67 0.883141
Target:  5'- aGAUCGGCGuCGGgccCGGGCGGcUCcgGCc -3'
miRNA:   3'- cCUAGCCGCcGCUa--GUCCGCC-AGa-UG- -5'
10726 3' -57.2 NC_002794.1 + 191880 0.67 0.883141
Target:  5'- cGGAgggGGCGGCGG--AGGCGGgaucgGCa -3'
miRNA:   3'- -CCUag-CCGCCGCUagUCCGCCaga--UG- -5'
10726 3' -57.2 NC_002794.1 + 133066 0.67 0.883141
Target:  5'- uGGGUCuuuuuGCGGUGAUCGGGgGGaCUu- -3'
miRNA:   3'- -CCUAGc----CGCCGCUAGUCCgCCaGAug -5'
10726 3' -57.2 NC_002794.1 + 177594 0.67 0.883141
Target:  5'- aGGcUCGGCGGagccUCGGGuCGGUCg-- -3'
miRNA:   3'- -CCuAGCCGCCgcu-AGUCC-GCCAGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.