miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10726 3' -57.2 NC_002794.1 + 154126 1.11 0.002397
Target:  5'- gGGAUCGGCGGCGAUCAGGCGGUCUACu -3'
miRNA:   3'- -CCUAGCCGCCGCUAGUCCGCCAGAUG- -5'
10726 3' -57.2 NC_002794.1 + 140102 0.89 0.071084
Target:  5'- uGGUCGGCGGCGAUCGacGGCGGUCgACg -3'
miRNA:   3'- cCUAGCCGCCGCUAGU--CCGCCAGaUG- -5'
10726 3' -57.2 NC_002794.1 + 113883 0.77 0.369653
Target:  5'- cGGccgCGGCGcGCG-UCGGcGCGGUCUGCa -3'
miRNA:   3'- -CCua-GCCGC-CGCuAGUC-CGCCAGAUG- -5'
10726 3' -57.2 NC_002794.1 + 185175 0.76 0.401934
Target:  5'- cGGcgCGGC-GCGGUCGGcGCGGUCgGCg -3'
miRNA:   3'- -CCuaGCCGcCGCUAGUC-CGCCAGaUG- -5'
10726 3' -57.2 NC_002794.1 + 86843 0.76 0.41028
Target:  5'- cGGGUCGGCGGCcccgcCGGGauugGGUCUGCc -3'
miRNA:   3'- -CCUAGCCGCCGcua--GUCCg---CCAGAUG- -5'
10726 3' -57.2 NC_002794.1 + 50767 0.73 0.585875
Target:  5'- cGGG-CGGCGGCGAcggcgcgucUCGGGCGG-Cg-- -3'
miRNA:   3'- -CCUaGCCGCCGCU---------AGUCCGCCaGaug -5'
10726 3' -57.2 NC_002794.1 + 182315 0.73 0.585875
Target:  5'- cGGG-CGGacgGGCGGUCGGGCGGgcggGCg -3'
miRNA:   3'- -CCUaGCCg--CCGCUAGUCCGCCaga-UG- -5'
10726 3' -57.2 NC_002794.1 + 142316 0.73 0.585875
Target:  5'- cGGAggCGGCGGCG--CAGGCGG-CggagGCg -3'
miRNA:   3'- -CCUa-GCCGCCGCuaGUCCGCCaGa---UG- -5'
10726 3' -57.2 NC_002794.1 + 71333 0.72 0.615527
Target:  5'- --cUCGGCGGCGAUgucguccgcCAGGCGGcgCaGCa -3'
miRNA:   3'- ccuAGCCGCCGCUA---------GUCCGCCa-GaUG- -5'
10726 3' -57.2 NC_002794.1 + 87356 0.71 0.674951
Target:  5'- cGGGUcCGGCGGCGAgc-GGCGuUCUGg -3'
miRNA:   3'- -CCUA-GCCGCCGCUaguCCGCcAGAUg -5'
10726 3' -57.2 NC_002794.1 + 177439 0.71 0.683804
Target:  5'- cGAUcCGGCGGgGAUCGGacucgucGCGGUC-ACg -3'
miRNA:   3'- cCUA-GCCGCCgCUAGUC-------CGCCAGaUG- -5'
10726 3' -57.2 NC_002794.1 + 116009 0.7 0.704322
Target:  5'- cGGAgaccgCGGUGGCGAUUGGcGCGGgg-ACc -3'
miRNA:   3'- -CCUa----GCCGCCGCUAGUC-CGCCagaUG- -5'
10726 3' -57.2 NC_002794.1 + 106350 0.7 0.72363
Target:  5'- cGGGUCGaCGGCGggCGGGCgccGGUUcGCg -3'
miRNA:   3'- -CCUAGCcGCCGCuaGUCCG---CCAGaUG- -5'
10726 3' -57.2 NC_002794.1 + 92245 0.7 0.72363
Target:  5'- aGGAgcccUCGGCGGCGucgCuGGCGG-CgGCg -3'
miRNA:   3'- -CCU----AGCCGCCGCua-GuCCGCCaGaUG- -5'
10726 3' -57.2 NC_002794.1 + 55297 0.7 0.72363
Target:  5'- aGGG-CGGCGGCGGcgUCGcGGCGGgcgCggGCg -3'
miRNA:   3'- -CCUaGCCGCCGCU--AGU-CCGCCa--Ga-UG- -5'
10726 3' -57.2 NC_002794.1 + 38153 0.7 0.72363
Target:  5'- aGGA--GGUaGGCGAgCAGGCGG-CUGCg -3'
miRNA:   3'- -CCUagCCG-CCGCUaGUCCGCCaGAUG- -5'
10726 3' -57.2 NC_002794.1 + 100527 0.7 0.752016
Target:  5'- cGGUCGGCGGCaccgagGAgcagCGGGCGGcCUu- -3'
miRNA:   3'- cCUAGCCGCCG------CUa---GUCCGCCaGAug -5'
10726 3' -57.2 NC_002794.1 + 58071 0.7 0.752016
Target:  5'- ---gCGGCGGCGGgaCGGGCGGcCcgGCg -3'
miRNA:   3'- ccuaGCCGCCGCUa-GUCCGCCaGa-UG- -5'
10726 3' -57.2 NC_002794.1 + 112394 0.7 0.752016
Target:  5'- ----gGGCGGCGAUCuuGGCGcG-CUGCa -3'
miRNA:   3'- ccuagCCGCCGCUAGu-CCGC-CaGAUG- -5'
10726 3' -57.2 NC_002794.1 + 126388 0.69 0.761291
Target:  5'- cGGGgccugcgCGGCGGCGugcgcGGCGGUCg-- -3'
miRNA:   3'- -CCUa------GCCGCCGCuagu-CCGCCAGaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.