miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10726 3' -57.2 NC_002794.1 + 563 0.69 0.805886
Target:  5'- cGGcgCGGCGGUGG-CAGGUcucGUUUACc -3'
miRNA:   3'- -CCuaGCCGCCGCUaGUCCGc--CAGAUG- -5'
10726 3' -57.2 NC_002794.1 + 880 0.69 0.797232
Target:  5'- cGGUCGGCGuGCGcgCGGGcCGGg-UGCc -3'
miRNA:   3'- cCUAGCCGC-CGCuaGUCC-GCCagAUG- -5'
10726 3' -57.2 NC_002794.1 + 2709 0.69 0.805886
Target:  5'- --uUCaGgGGCGGUCugGGGCGGUCUuugGCg -3'
miRNA:   3'- ccuAGcCgCCGCUAG--UCCGCCAGA---UG- -5'
10726 3' -57.2 NC_002794.1 + 11262 0.67 0.876272
Target:  5'- gGGGUCgGGCGacGCGGUCAccugguGGCGcGUCcGCa -3'
miRNA:   3'- -CCUAG-CCGC--CGCUAGU------CCGC-CAGaUG- -5'
10726 3' -57.2 NC_002794.1 + 12222 0.66 0.925195
Target:  5'- cGGcGUCGGCGGCGccggCGGcGCcGUCcGCg -3'
miRNA:   3'- -CC-UAGCCGCCGCua--GUC-CGcCAGaUG- -5'
10726 3' -57.2 NC_002794.1 + 20380 0.69 0.770458
Target:  5'- cGGAUCGucgacgcgguGCGGCGGgacCGGGagcggggccacaCGGUCUACc -3'
miRNA:   3'- -CCUAGC----------CGCCGCUa--GUCC------------GCCAGAUG- -5'
10726 3' -57.2 NC_002794.1 + 32874 0.66 0.89625
Target:  5'- cGGG-CGGCGGCGG-C-GGCGG-CgGCa -3'
miRNA:   3'- -CCUaGCCGCCGCUaGuCCGCCaGaUG- -5'
10726 3' -57.2 NC_002794.1 + 36952 0.68 0.846794
Target:  5'- -cGUCGcGCGGCGG-CAGGCaGUCg-- -3'
miRNA:   3'- ccUAGC-CGCCGCUaGUCCGcCAGaug -5'
10726 3' -57.2 NC_002794.1 + 37268 0.66 0.902481
Target:  5'- -cGUCGGCgGGCGcgCGGGCGcGgcgUACa -3'
miRNA:   3'- ccUAGCCG-CCGCuaGUCCGC-Cag-AUG- -5'
10726 3' -57.2 NC_002794.1 + 37754 0.66 0.908493
Target:  5'- cGGcgCGGCGGCGcc--GGCGGga-GCg -3'
miRNA:   3'- -CCuaGCCGCCGCuaguCCGCCagaUG- -5'
10726 3' -57.2 NC_002794.1 + 38153 0.7 0.72363
Target:  5'- aGGA--GGUaGGCGAgCAGGCGG-CUGCg -3'
miRNA:   3'- -CCUagCCG-CCGCUaGUCCGCCaGAUG- -5'
10726 3' -57.2 NC_002794.1 + 50767 0.73 0.585875
Target:  5'- cGGG-CGGCGGCGAcggcgcgucUCGGGCGG-Cg-- -3'
miRNA:   3'- -CCUaGCCGCCGCU---------AGUCCGCCaGaug -5'
10726 3' -57.2 NC_002794.1 + 54076 0.66 0.908493
Target:  5'- aGGAugUUGGCGuuGCGAccCAGGUGGUCc-- -3'
miRNA:   3'- -CCU--AGCCGC--CGCUa-GUCCGCCAGaug -5'
10726 3' -57.2 NC_002794.1 + 55208 0.66 0.902481
Target:  5'- cGGcgCGGCGGaGG-CcGGCGGUCg-- -3'
miRNA:   3'- -CCuaGCCGCCgCUaGuCCGCCAGaug -5'
10726 3' -57.2 NC_002794.1 + 55297 0.7 0.72363
Target:  5'- aGGG-CGGCGGCGGcgUCGcGGCGGgcgCggGCg -3'
miRNA:   3'- -CCUaGCCGCCGCU--AGU-CCGCCa--Ga-UG- -5'
10726 3' -57.2 NC_002794.1 + 58071 0.7 0.752016
Target:  5'- ---gCGGCGGCGGgaCGGGCGGcCcgGCg -3'
miRNA:   3'- ccuaGCCGCCGCUa-GUCCGCCaGa-UG- -5'
10726 3' -57.2 NC_002794.1 + 61174 0.68 0.838952
Target:  5'- cGGAUCGGCGGCuGGUCGcuCGuG-CUGCc -3'
miRNA:   3'- -CCUAGCCGCCG-CUAGUccGC-CaGAUG- -5'
10726 3' -57.2 NC_002794.1 + 66507 0.69 0.797232
Target:  5'- uGAUCGGCGaGCGA-UAGGCcguccccgGGUCcGCg -3'
miRNA:   3'- cCUAGCCGC-CGCUaGUCCG--------CCAGaUG- -5'
10726 3' -57.2 NC_002794.1 + 71333 0.72 0.615527
Target:  5'- --cUCGGCGGCGAUgucguccgcCAGGCGGcgCaGCa -3'
miRNA:   3'- ccuAGCCGCCGCUA---------GUCCGCCa-GaUG- -5'
10726 3' -57.2 NC_002794.1 + 79438 0.67 0.861922
Target:  5'- cGGcggCGGCGGCGAcCGGcGCGGag-ACg -3'
miRNA:   3'- -CCua-GCCGCCGCUaGUC-CGCCagaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.