miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10726 5' -54.7 NC_002794.1 + 106384 0.66 0.972368
Target:  5'- aGGGCAGAcgGCggGCGaacGGUCGGaccccGGCgGCg -3'
miRNA:   3'- -CCCGUCU--UGa-UGCa--CUAGUC-----CCGgCG- -5'
10726 5' -54.7 NC_002794.1 + 106050 0.66 0.972368
Target:  5'- cGGCuGAACUuCGUcaacguGGGCCGCc -3'
miRNA:   3'- cCCGuCUUGAuGCAcuagu-CCCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 48627 0.66 0.972368
Target:  5'- -cGCGGAGCgGCc--GUCGGGGcCCGCg -3'
miRNA:   3'- ccCGUCUUGaUGcacUAGUCCC-GGCG- -5'
10726 5' -54.7 NC_002794.1 + 52697 0.66 0.9707
Target:  5'- cGGcGCAGaAACUcccggccgugauagaGCGUGGUCu--GCCGCa -3'
miRNA:   3'- -CC-CGUC-UUGA---------------UGCACUAGuccCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 19960 0.66 0.969548
Target:  5'- cGGGCuucGAGCUGCGgccgcccuUC-GGGCUGUc -3'
miRNA:   3'- -CCCGu--CUUGAUGCacu-----AGuCCCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 98376 0.66 0.969548
Target:  5'- uGGCGGGAg-ACGUGAUCGcguuGGCCa- -3'
miRNA:   3'- cCCGUCUUgaUGCACUAGUc---CCGGcg -5'
10726 5' -54.7 NC_002794.1 + 143341 0.66 0.969548
Target:  5'- cGGGCAGcgGGCUcggGCGauagggGAUCAGGGUgagggGCa -3'
miRNA:   3'- -CCCGUC--UUGA---UGCa-----CUAGUCCCGg----CG- -5'
10726 5' -54.7 NC_002794.1 + 129258 0.66 0.969548
Target:  5'- cGGGUcGAGCgccucguCGUGAgc-GGGCCGg -3'
miRNA:   3'- -CCCGuCUUGau-----GCACUaguCCCGGCg -5'
10726 5' -54.7 NC_002794.1 + 115281 0.66 0.969548
Target:  5'- cGGCGuGGAC-ACGggGAaCGGGGaCCGCu -3'
miRNA:   3'- cCCGU-CUUGaUGCa-CUaGUCCC-GGCG- -5'
10726 5' -54.7 NC_002794.1 + 86787 0.66 0.969255
Target:  5'- cGGCcgcuccggaaccgAGAcCUAgGggaGAUcCAGGGCCGCg -3'
miRNA:   3'- cCCG-------------UCUuGAUgCa--CUA-GUCCCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 145350 0.66 0.966529
Target:  5'- cGGGCccGAGCUGggggUGUGGUCAccGGGCgGa -3'
miRNA:   3'- -CCCGu-CUUGAU----GCACUAGU--CCCGgCg -5'
10726 5' -54.7 NC_002794.1 + 80427 0.66 0.966529
Target:  5'- cGGGCGGGGCcGCcgc--CGGcGGCCGCc -3'
miRNA:   3'- -CCCGUCUUGaUGcacuaGUC-CCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 189048 0.66 0.966215
Target:  5'- cGGCGG-GCUGCGc-GUCGcguacggcgucucGGGCCGCc -3'
miRNA:   3'- cCCGUCuUGAUGCacUAGU-------------CCCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 134931 0.66 0.963304
Target:  5'- cGGGCGGAcggGCUAUcUGuAUguGGcgaaGCCGCg -3'
miRNA:   3'- -CCCGUCU---UGAUGcAC-UAguCC----CGGCG- -5'
10726 5' -54.7 NC_002794.1 + 56288 0.66 0.963304
Target:  5'- cGGCAGAGC-ACGaUGcgCGcGcGGUCGCg -3'
miRNA:   3'- cCCGUCUUGaUGC-ACuaGU-C-CCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 13052 0.66 0.963304
Target:  5'- -uGCGGAaccccACUAUuUGAg-GGGGCCGCg -3'
miRNA:   3'- ccCGUCU-----UGAUGcACUagUCCCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 87024 0.66 0.959868
Target:  5'- aGGGUccgcaggauccgGGGACcgGCGcGGcUCGGGGCCGg -3'
miRNA:   3'- -CCCG------------UCUUGa-UGCaCU-AGUCCCGGCg -5'
10726 5' -54.7 NC_002794.1 + 116413 0.66 0.959868
Target:  5'- gGGGCGcGAGCaccaggGCGcgGGUCAGGacGCCGa -3'
miRNA:   3'- -CCCGU-CUUGa-----UGCa-CUAGUCC--CGGCg -5'
10726 5' -54.7 NC_002794.1 + 91310 0.66 0.959513
Target:  5'- aGGCGcucuucuACUACGUGuucacggcgcuggGUCAGGcGCUGCg -3'
miRNA:   3'- cCCGUcu-----UGAUGCAC-------------UAGUCC-CGGCG- -5'
10726 5' -54.7 NC_002794.1 + 90452 0.67 0.957704
Target:  5'- aGGC-GAGCUuuucggcgaggccgcGCGcGG-CGGGGCCGCc -3'
miRNA:   3'- cCCGuCUUGA---------------UGCaCUaGUCCCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.