miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10726 5' -54.7 NC_002794.1 + 154170 1.13 0.003011
Target:  5'- gGGGCAGAACUACGUGAUCAGGGCCGCc -3'
miRNA:   3'- -CCCGUCUUGAUGCACUAGUCCCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 67076 0.77 0.48962
Target:  5'- uGGCcuuGAugUACGUG-UCGGGGCCGa -3'
miRNA:   3'- cCCGu--CUugAUGCACuAGUCCCGGCg -5'
10726 5' -54.7 NC_002794.1 + 92428 0.76 0.50863
Target:  5'- cGGGCgAGGAC-ACGcUGGccgugCGGGGCCGCg -3'
miRNA:   3'- -CCCG-UCUUGaUGC-ACUa----GUCCCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 190338 0.74 0.627592
Target:  5'- uGGCgaAGAACUGCGUcaGGUCGucGGCCGCg -3'
miRNA:   3'- cCCG--UCUUGAUGCA--CUAGUc-CCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 85940 0.74 0.667925
Target:  5'- cGGGCucGGAACcgACccgGAaCGGGGCCGCg -3'
miRNA:   3'- -CCCG--UCUUGa-UGca-CUaGUCCCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 142702 0.73 0.693932
Target:  5'- aGGGCGGAGaucaaaagugGUGGUgGGGGUCGCg -3'
miRNA:   3'- -CCCGUCUUgaug------CACUAgUCCCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 91412 0.73 0.697906
Target:  5'- -cGCAGAACaGCGUGAagCuGGcGCCGCa -3'
miRNA:   3'- ccCGUCUUGaUGCACUa-GuCC-CGGCG- -5'
10726 5' -54.7 NC_002794.1 + 105193 0.73 0.697906
Target:  5'- aGGuGCAgGAACUcggacGCgGUGAUCAGGGUCGa -3'
miRNA:   3'- -CC-CGU-CUUGA-----UG-CACUAGUCCCGGCg -5'
10726 5' -54.7 NC_002794.1 + 130593 0.73 0.71764
Target:  5'- cGGGCAGcGCUAucCGccGAUCGuGGGCCGg -3'
miRNA:   3'- -CCCGUCuUGAU--GCa-CUAGU-CCCGGCg -5'
10726 5' -54.7 NC_002794.1 + 111619 0.71 0.783998
Target:  5'- cGGCGGGGCcgccGCGgccgccgccGGUCGGGcGCCGCg -3'
miRNA:   3'- cCCGUCUUGa---UGCa--------CUAGUCC-CGGCG- -5'
10726 5' -54.7 NC_002794.1 + 148673 0.71 0.783998
Target:  5'- aGGaGCGGAugUACGUGcUCA--GCCGCu -3'
miRNA:   3'- -CC-CGUCUugAUGCACuAGUccCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 86377 0.71 0.810621
Target:  5'- cGGGCcGAGCcgggACG-GAugcUCcGGGCCGCg -3'
miRNA:   3'- -CCCGuCUUGa---UGCaCU---AGuCCCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 86545 0.71 0.810621
Target:  5'- cGGGCcGAGCcgggACG-GAugcUCcGGGCCGCg -3'
miRNA:   3'- -CCCGuCUUGa---UGCaCU---AGuCCCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 86185 0.71 0.810621
Target:  5'- cGGGCcGAGCcgggACG-GAugcUCcGGGCCGCg -3'
miRNA:   3'- -CCCGuCUUGa---UGCaCU---AGuCCCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 143029 0.71 0.819191
Target:  5'- cGGCcGggUcgACGUG--CAGGGCCGCc -3'
miRNA:   3'- cCCGuCuuGa-UGCACuaGUCCCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 48889 0.7 0.843081
Target:  5'- uGGCAGGcCaGCGUugccgcaGcUCGGGGCCGCu -3'
miRNA:   3'- cCCGUCUuGaUGCA-------CuAGUCCCGGCG- -5'
10726 5' -54.7 NC_002794.1 + 150095 0.7 0.843878
Target:  5'- uGGGCGGA---GCGUGAggcCGGaGcGCCGCu -3'
miRNA:   3'- -CCCGUCUugaUGCACUa--GUC-C-CGGCG- -5'
10726 5' -54.7 NC_002794.1 + 185046 0.7 0.843878
Target:  5'- cGGCAGcAACaGCGUGGUCugcaGCCGCc -3'
miRNA:   3'- cCCGUC-UUGaUGCACUAGucc-CGGCG- -5'
10726 5' -54.7 NC_002794.1 + 126359 0.7 0.850964
Target:  5'- cGGCuccGAuuucgccGCUGCGUGGgcgcCGGGGCCuGCg -3'
miRNA:   3'- cCCGu--CU-------UGAUGCACUa---GUCCCGG-CG- -5'
10726 5' -54.7 NC_002794.1 + 118270 0.7 0.851742
Target:  5'- gGGGCGGcGGCgcCGgcGUCGGGGaCCGCg -3'
miRNA:   3'- -CCCGUC-UUGauGCacUAGUCCC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.