miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10727 3' -59 NC_002794.1 + 180904 0.65 0.883486
Target:  5'- --gCGGACucggccgcggucuCGCCGGCGCCgucGgagGUCGg -3'
miRNA:   3'- gagGCCUGu------------GCGGCUGCGGa--Ca--CAGC- -5'
10727 3' -59 NC_002794.1 + 15107 0.66 0.879469
Target:  5'- aUCCcGACGCGCCGGagaccgacCGCC-GUGUUc -3'
miRNA:   3'- gAGGcCUGUGCGGCU--------GCGGaCACAGc -5'
10727 3' -59 NC_002794.1 + 80519 0.66 0.879469
Target:  5'- -gCCGcGGCGCG-CGACGCCUGgcacCGg -3'
miRNA:   3'- gaGGC-CUGUGCgGCUGCGGACaca-GC- -5'
10727 3' -59 NC_002794.1 + 114748 0.66 0.879469
Target:  5'- -gCCGGcgccGCcCGCCGGCGCCg--GUCc -3'
miRNA:   3'- gaGGCC----UGuGCGGCUGCGGacaCAGc -5'
10727 3' -59 NC_002794.1 + 46378 0.66 0.879469
Target:  5'- uCUCCGGGCGCGCuaCGACGagCUGaaaCGg -3'
miRNA:   3'- -GAGGCCUGUGCG--GCUGCg-GACacaGC- -5'
10727 3' -59 NC_002794.1 + 117276 0.66 0.872614
Target:  5'- aCUCCGcGACgcccuGCGCgGACaGCUgcggcGUGUCGa -3'
miRNA:   3'- -GAGGC-CUG-----UGCGgCUG-CGGa----CACAGC- -5'
10727 3' -59 NC_002794.1 + 57939 0.66 0.865564
Target:  5'- aCUUCGccGACGCGCUGcGCaGCCUGUGcCa -3'
miRNA:   3'- -GAGGC--CUGUGCGGC-UG-CGGACACaGc -5'
10727 3' -59 NC_002794.1 + 137653 0.66 0.858324
Target:  5'- -gCCGGGC-CuCCGGCGCCgcugGUG-CGg -3'
miRNA:   3'- gaGGCCUGuGcGGCUGCGGa---CACaGC- -5'
10727 3' -59 NC_002794.1 + 85064 0.66 0.858324
Target:  5'- -aCCGGcCACGCCG-CGUCUGcgcccccgGUCu -3'
miRNA:   3'- gaGGCCuGUGCGGCuGCGGACa-------CAGc -5'
10727 3' -59 NC_002794.1 + 16779 0.66 0.850899
Target:  5'- --aCGGcACGCGCCGACGCCaaa-UCGc -3'
miRNA:   3'- gagGCC-UGUGCGGCUGCGGacacAGC- -5'
10727 3' -59 NC_002794.1 + 43889 0.66 0.843294
Target:  5'- -cCCGGcCGuCGCCGGCGUCUcGUGagGa -3'
miRNA:   3'- gaGGCCuGU-GCGGCUGCGGA-CACagC- -5'
10727 3' -59 NC_002794.1 + 121639 0.66 0.843294
Target:  5'- uCUCCGGGagaACGCCGuCGCCguaacgCGa -3'
miRNA:   3'- -GAGGCCUg--UGCGGCuGCGGacaca-GC- -5'
10727 3' -59 NC_002794.1 + 123768 0.66 0.843294
Target:  5'- -cCCGG--GCGUgGACGCCUccGUGUUGg -3'
miRNA:   3'- gaGGCCugUGCGgCUGCGGA--CACAGC- -5'
10727 3' -59 NC_002794.1 + 134606 0.67 0.835514
Target:  5'- aCUCCGGAUccCGCCGAguugaccgccauCGCCUGccgGUUc -3'
miRNA:   3'- -GAGGCCUGu-GCGGCU------------GCGGACa--CAGc -5'
10727 3' -59 NC_002794.1 + 101441 0.67 0.835514
Target:  5'- aUCCGGGgACGCCGGCGCg------- -3'
miRNA:   3'- gAGGCCUgUGCGGCUGCGgacacagc -5'
10727 3' -59 NC_002794.1 + 44192 0.67 0.835514
Target:  5'- aCUCCGGGCGaagccggGCCGACGUCcGgcUCGg -3'
miRNA:   3'- -GAGGCCUGUg------CGGCUGCGGaCacAGC- -5'
10727 3' -59 NC_002794.1 + 19522 0.67 0.835514
Target:  5'- -cUCGGA-GCGCCGGCgcggcgcggcccGCCgGUGUCGg -3'
miRNA:   3'- gaGGCCUgUGCGGCUG------------CGGaCACAGC- -5'
10727 3' -59 NC_002794.1 + 17583 0.67 0.835514
Target:  5'- -aCCGGACccgACGCCaccGACGCCUcgGUCc -3'
miRNA:   3'- gaGGCCUG---UGCGG---CUGCGGAcaCAGc -5'
10727 3' -59 NC_002794.1 + 147254 0.67 0.827567
Target:  5'- aCUCCGGGCAgacgcucgagcUGCCGugGCC---GUCc -3'
miRNA:   3'- -GAGGCCUGU-----------GCGGCugCGGacaCAGc -5'
10727 3' -59 NC_002794.1 + 102408 0.67 0.81946
Target:  5'- uUCCGcGACGCgGCCGugGCCgagGcCGc -3'
miRNA:   3'- gAGGC-CUGUG-CGGCugCGGacaCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.