miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10727 3' -59 NC_002794.1 + 152953 0.95 0.022562
Target:  5'- uCUCCGGACACGCCGACGCCUugGUCGg -3'
miRNA:   3'- -GAGGCCUGUGCGGCUGCGGAcaCAGC- -5'
10727 3' -59 NC_002794.1 + 17277 0.77 0.308108
Target:  5'- -cCCGGGCACGCCGcCGCCgacgGUCa -3'
miRNA:   3'- gaGGCCUGUGCGGCuGCGGaca-CAGc -5'
10727 3' -59 NC_002794.1 + 14645 0.76 0.358125
Target:  5'- --aCGGAgACGCCGGCGCCgcgGcGUCGg -3'
miRNA:   3'- gagGCCUgUGCGGCUGCGGa--CaCAGC- -5'
10727 3' -59 NC_002794.1 + 62808 0.75 0.381236
Target:  5'- uCUCCGG-CACGCCGGCGCCguacuuUCGc -3'
miRNA:   3'- -GAGGCCuGUGCGGCUGCGGacac--AGC- -5'
10727 3' -59 NC_002794.1 + 187755 0.73 0.482969
Target:  5'- uCUCCGaACGCcGCCGGCGCCg--GUCGc -3'
miRNA:   3'- -GAGGCcUGUG-CGGCUGCGGacaCAGC- -5'
10727 3' -59 NC_002794.1 + 190795 0.71 0.576717
Target:  5'- gUCCgGGACACGCCGuaacGCGCCaGcucGUCGa -3'
miRNA:   3'- gAGG-CCUGUGCGGC----UGCGGaCa--CAGC- -5'
10727 3' -59 NC_002794.1 + 80753 0.7 0.663202
Target:  5'- gUCCGGGCcacGCGCuCGGaccucuuCGaCCUGUGUCGc -3'
miRNA:   3'- gAGGCCUG---UGCG-GCU-------GC-GGACACAGC- -5'
10727 3' -59 NC_002794.1 + 58524 0.7 0.664173
Target:  5'- --aCGGGCACGCCGAgGCCU---UCGc -3'
miRNA:   3'- gagGCCUGUGCGGCUgCGGAcacAGC- -5'
10727 3' -59 NC_002794.1 + 98964 0.7 0.673866
Target:  5'- -gCUGGGCgccgucggcgGCGCCGugGCCUcGgugGUCGg -3'
miRNA:   3'- gaGGCCUG----------UGCGGCugCGGA-Ca--CAGC- -5'
10727 3' -59 NC_002794.1 + 60662 0.69 0.693153
Target:  5'- -cCCGGcGCGCGCCGccgcCGCCUccGUCGa -3'
miRNA:   3'- gaGGCC-UGUGCGGCu---GCGGAcaCAGC- -5'
10727 3' -59 NC_002794.1 + 99954 0.69 0.711306
Target:  5'- -gCCGGAC-CGCCGACggcgccaGUCUGUG-CGu -3'
miRNA:   3'- gaGGCCUGuGCGGCUG-------CGGACACaGC- -5'
10727 3' -59 NC_002794.1 + 137376 0.69 0.712255
Target:  5'- -gCCGGGCgaGCGCCGACGCggGUccgGUCu -3'
miRNA:   3'- gaGGCCUG--UGCGGCUGCGgaCA---CAGc -5'
10727 3' -59 NC_002794.1 + 131151 0.69 0.73111
Target:  5'- aUCCGGucGCACGCCagcacGGCGCCcGUcUCGa -3'
miRNA:   3'- gAGGCC--UGUGCGG-----CUGCGGaCAcAGC- -5'
10727 3' -59 NC_002794.1 + 77942 0.68 0.740425
Target:  5'- -gCCGGAgGCGCCGcgauCGCCgccGUCGc -3'
miRNA:   3'- gaGGCCUgUGCGGCu---GCGGacaCAGC- -5'
10727 3' -59 NC_002794.1 + 48025 0.68 0.740425
Target:  5'- gCUUCGGcguCACGCCgGACGCCgaGUG-CGu -3'
miRNA:   3'- -GAGGCCu--GUGCGG-CUGCGGa-CACaGC- -5'
10727 3' -59 NC_002794.1 + 98249 0.68 0.749654
Target:  5'- -aUCGGccACAuCGCCGAgGCCUgGUGUCu -3'
miRNA:   3'- gaGGCC--UGU-GCGGCUgCGGA-CACAGc -5'
10727 3' -59 NC_002794.1 + 91828 0.68 0.749654
Target:  5'- ---aGGACGCGCugaaCGACGCCUGUcgcaccGUCa -3'
miRNA:   3'- gaggCCUGUGCG----GCUGCGGACA------CAGc -5'
10727 3' -59 NC_002794.1 + 57403 0.68 0.775861
Target:  5'- gCUCCGG-CGCccgcgugGCCGGCGUgCUG-GUCGg -3'
miRNA:   3'- -GAGGCCuGUG-------CGGCUGCG-GACaCAGC- -5'
10727 3' -59 NC_002794.1 + 67206 0.68 0.785556
Target:  5'- gUCCGGGCgguGCGCuCGGCGCCgGg--CGg -3'
miRNA:   3'- gAGGCCUG---UGCG-GCUGCGGaCacaGC- -5'
10727 3' -59 NC_002794.1 + 143744 0.68 0.785556
Target:  5'- -gCCGGACGCGCCGccggggggcucCGCUcGUcGUCGg -3'
miRNA:   3'- gaGGCCUGUGCGGCu----------GCGGaCA-CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.