miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10727 3' -59 NC_002794.1 + 14645 0.76 0.358125
Target:  5'- --aCGGAgACGCCGGCGCCgcgGcGUCGg -3'
miRNA:   3'- gagGCCUgUGCGGCUGCGGa--CaCAGC- -5'
10727 3' -59 NC_002794.1 + 15107 0.66 0.879469
Target:  5'- aUCCcGACGCGCCGGagaccgacCGCC-GUGUUc -3'
miRNA:   3'- gAGGcCUGUGCGGCU--------GCGGaCACAGc -5'
10727 3' -59 NC_002794.1 + 16779 0.66 0.850899
Target:  5'- --aCGGcACGCGCCGACGCCaaa-UCGc -3'
miRNA:   3'- gagGCC-UGUGCGGCUGCGGacacAGC- -5'
10727 3' -59 NC_002794.1 + 17277 0.77 0.308108
Target:  5'- -cCCGGGCACGCCGcCGCCgacgGUCa -3'
miRNA:   3'- gaGGCCUGUGCGGCuGCGGaca-CAGc -5'
10727 3' -59 NC_002794.1 + 17583 0.67 0.835514
Target:  5'- -aCCGGACccgACGCCaccGACGCCUcgGUCc -3'
miRNA:   3'- gaGGCCUG---UGCGG---CUGCGGAcaCAGc -5'
10727 3' -59 NC_002794.1 + 19522 0.67 0.835514
Target:  5'- -cUCGGA-GCGCCGGCgcggcgcggcccGCCgGUGUCGg -3'
miRNA:   3'- gaGGCCUgUGCGGCUG------------CGGaCACAGC- -5'
10727 3' -59 NC_002794.1 + 33465 0.67 0.802788
Target:  5'- -gCCGGACGCGCCcACGCCg------ -3'
miRNA:   3'- gaGGCCUGUGCGGcUGCGGacacagc -5'
10727 3' -59 NC_002794.1 + 41244 0.67 0.802788
Target:  5'- -gCCGcGGC-CGCCGACGCCggcGgcccGUCGu -3'
miRNA:   3'- gaGGC-CUGuGCGGCUGCGGa--Ca---CAGC- -5'
10727 3' -59 NC_002794.1 + 43889 0.66 0.843294
Target:  5'- -cCCGGcCGuCGCCGGCGUCUcGUGagGa -3'
miRNA:   3'- gaGGCCuGU-GCGGCUGCGGA-CACagC- -5'
10727 3' -59 NC_002794.1 + 44192 0.67 0.835514
Target:  5'- aCUCCGGGCGaagccggGCCGACGUCcGgcUCGg -3'
miRNA:   3'- -GAGGCCUGUg------CGGCUGCGGaCacAGC- -5'
10727 3' -59 NC_002794.1 + 46378 0.66 0.879469
Target:  5'- uCUCCGGGCGCGCuaCGACGagCUGaaaCGg -3'
miRNA:   3'- -GAGGCCUGUGCG--GCUGCg-GACacaGC- -5'
10727 3' -59 NC_002794.1 + 48025 0.68 0.740425
Target:  5'- gCUUCGGcguCACGCCgGACGCCgaGUG-CGu -3'
miRNA:   3'- -GAGGCCu--GUGCGG-CUGCGGa-CACaGC- -5'
10727 3' -59 NC_002794.1 + 57403 0.68 0.775861
Target:  5'- gCUCCGG-CGCccgcgugGCCGGCGUgCUG-GUCGg -3'
miRNA:   3'- -GAGGCCuGUG-------CGGCUGCG-GACaCAGC- -5'
10727 3' -59 NC_002794.1 + 57939 0.66 0.865564
Target:  5'- aCUUCGccGACGCGCUGcGCaGCCUGUGcCa -3'
miRNA:   3'- -GAGGC--CUGUGCGGC-UG-CGGACACaGc -5'
10727 3' -59 NC_002794.1 + 58524 0.7 0.664173
Target:  5'- --aCGGGCACGCCGAgGCCU---UCGc -3'
miRNA:   3'- gagGCCUGUGCGGCUgCGGAcacAGC- -5'
10727 3' -59 NC_002794.1 + 60662 0.69 0.693153
Target:  5'- -cCCGGcGCGCGCCGccgcCGCCUccGUCGa -3'
miRNA:   3'- gaGGCC-UGUGCGGCu---GCGGAcaCAGC- -5'
10727 3' -59 NC_002794.1 + 61818 0.67 0.811197
Target:  5'- uCUCCGGcgGC-CGCCGGCgGCCgGcGUCa -3'
miRNA:   3'- -GAGGCC--UGuGCGGCUG-CGGaCaCAGc -5'
10727 3' -59 NC_002794.1 + 61851 0.67 0.81946
Target:  5'- gCUCCgcgccccauGGACgACGCCGcGCGCC-GUcGUCGg -3'
miRNA:   3'- -GAGG---------CCUG-UGCGGC-UGCGGaCA-CAGC- -5'
10727 3' -59 NC_002794.1 + 62808 0.75 0.381236
Target:  5'- uCUCCGG-CACGCCGGCGCCguacuuUCGc -3'
miRNA:   3'- -GAGGCCuGUGCGGCUGCGGacac--AGC- -5'
10727 3' -59 NC_002794.1 + 67206 0.68 0.785556
Target:  5'- gUCCGGGCgguGCGCuCGGCGCCgGg--CGg -3'
miRNA:   3'- gAGGCCUG---UGCG-GCUGCGGaCacaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.