miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10727 3' -59 NC_002794.1 + 67346 0.67 0.802788
Target:  5'- -cCCGGcgccgcccCACGCCGcacaGCGCCacGUGUCGa -3'
miRNA:   3'- gaGGCCu-------GUGCGGC----UGCGGa-CACAGC- -5'
10727 3' -59 NC_002794.1 + 77942 0.68 0.740425
Target:  5'- -gCCGGAgGCGCCGcgauCGCCgccGUCGc -3'
miRNA:   3'- gaGGCCUgUGCGGCu---GCGGacaCAGC- -5'
10727 3' -59 NC_002794.1 + 80519 0.66 0.879469
Target:  5'- -gCCGcGGCGCG-CGACGCCUGgcacCGg -3'
miRNA:   3'- gaGGC-CUGUGCgGCUGCGGACaca-GC- -5'
10727 3' -59 NC_002794.1 + 80753 0.7 0.663202
Target:  5'- gUCCGGGCcacGCGCuCGGaccucuuCGaCCUGUGUCGc -3'
miRNA:   3'- gAGGCCUG---UGCG-GCU-------GC-GGACACAGC- -5'
10727 3' -59 NC_002794.1 + 83418 0.67 0.802788
Target:  5'- uUCCGGauGCugGCCGGCaaGCCg--GUCa -3'
miRNA:   3'- gAGGCC--UGugCGGCUG--CGGacaCAGc -5'
10727 3' -59 NC_002794.1 + 85064 0.66 0.858324
Target:  5'- -aCCGGcCACGCCG-CGUCUGcgcccccgGUCu -3'
miRNA:   3'- gaGGCCuGUGCGGCuGCGGACa-------CAGc -5'
10727 3' -59 NC_002794.1 + 89406 0.67 0.802788
Target:  5'- gUCCGuGGaGCGCCGGCGCCaucaucUGUCa -3'
miRNA:   3'- gAGGC-CUgUGCGGCUGCGGac----ACAGc -5'
10727 3' -59 NC_002794.1 + 90213 0.67 0.81946
Target:  5'- cCUCCGcccgcCGCGCCGGagcccCGCCUGUgGUCc -3'
miRNA:   3'- -GAGGCcu---GUGCGGCU-----GCGGACA-CAGc -5'
10727 3' -59 NC_002794.1 + 91828 0.68 0.749654
Target:  5'- ---aGGACGCGCugaaCGACGCCUGUcgcaccGUCa -3'
miRNA:   3'- gaggCCUGUGCG----GCUGCGGACA------CAGc -5'
10727 3' -59 NC_002794.1 + 98249 0.68 0.749654
Target:  5'- -aUCGGccACAuCGCCGAgGCCUgGUGUCu -3'
miRNA:   3'- gaGGCC--UGU-GCGGCUgCGGA-CACAGc -5'
10727 3' -59 NC_002794.1 + 98964 0.7 0.673866
Target:  5'- -gCUGGGCgccgucggcgGCGCCGugGCCUcGgugGUCGg -3'
miRNA:   3'- gaGGCCUG----------UGCGGCugCGGA-Ca--CAGC- -5'
10727 3' -59 NC_002794.1 + 99954 0.69 0.711306
Target:  5'- -gCCGGAC-CGCCGACggcgccaGUCUGUG-CGu -3'
miRNA:   3'- gaGGCCUGuGCGGCUG-------CGGACACaGC- -5'
10727 3' -59 NC_002794.1 + 100588 0.67 0.802788
Target:  5'- gCUCgGGccguGCGCGCCGAUcCCggggGUGUUGg -3'
miRNA:   3'- -GAGgCC----UGUGCGGCUGcGGa---CACAGC- -5'
10727 3' -59 NC_002794.1 + 101441 0.67 0.835514
Target:  5'- aUCCGGGgACGCCGGCGCg------- -3'
miRNA:   3'- gAGGCCUgUGCGGCUGCGgacacagc -5'
10727 3' -59 NC_002794.1 + 102408 0.67 0.81946
Target:  5'- uUCCGcGACGCgGCCGugGCCgagGcCGc -3'
miRNA:   3'- gAGGC-CUGUG-CGGCugCGGacaCaGC- -5'
10727 3' -59 NC_002794.1 + 114748 0.66 0.879469
Target:  5'- -gCCGGcgccGCcCGCCGGCGCCg--GUCc -3'
miRNA:   3'- gaGGCC----UGuGCGGCUGCGGacaCAGc -5'
10727 3' -59 NC_002794.1 + 117276 0.66 0.872614
Target:  5'- aCUCCGcGACgcccuGCGCgGACaGCUgcggcGUGUCGa -3'
miRNA:   3'- -GAGGC-CUG-----UGCGgCUG-CGGa----CACAGC- -5'
10727 3' -59 NC_002794.1 + 121639 0.66 0.843294
Target:  5'- uCUCCGGGagaACGCCGuCGCCguaacgCGa -3'
miRNA:   3'- -GAGGCCUg--UGCGGCuGCGGacaca-GC- -5'
10727 3' -59 NC_002794.1 + 123768 0.66 0.843294
Target:  5'- -cCCGG--GCGUgGACGCCUccGUGUUGg -3'
miRNA:   3'- gaGGCCugUGCGgCUGCGGA--CACAGC- -5'
10727 3' -59 NC_002794.1 + 131151 0.69 0.73111
Target:  5'- aUCCGGucGCACGCCagcacGGCGCCcGUcUCGa -3'
miRNA:   3'- gAGGCC--UGUGCGG-----CUGCGGaCAcAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.