miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10727 3' -59 NC_002794.1 + 190795 0.71 0.576717
Target:  5'- gUCCgGGACACGCCGuaacGCGCCaGcucGUCGa -3'
miRNA:   3'- gAGG-CCUGUGCGGC----UGCGGaCa--CAGC- -5'
10727 3' -59 NC_002794.1 + 187755 0.73 0.482969
Target:  5'- uCUCCGaACGCcGCCGGCGCCg--GUCGc -3'
miRNA:   3'- -GAGGCcUGUG-CGGCUGCGGacaCAGC- -5'
10727 3' -59 NC_002794.1 + 182029 0.67 0.811197
Target:  5'- gUCCGGGC-CGCCGGCGaCCaGaccagGUCc -3'
miRNA:   3'- gAGGCCUGuGCGGCUGC-GGaCa----CAGc -5'
10727 3' -59 NC_002794.1 + 180904 0.65 0.883486
Target:  5'- --gCGGACucggccgcggucuCGCCGGCGCCgucGgagGUCGg -3'
miRNA:   3'- gagGCCUGu------------GCGGCUGCGGa--Ca--CAGC- -5'
10727 3' -59 NC_002794.1 + 152953 0.95 0.022562
Target:  5'- uCUCCGGACACGCCGACGCCUugGUCGg -3'
miRNA:   3'- -GAGGCCUGUGCGGCUGCGGAcaCAGC- -5'
10727 3' -59 NC_002794.1 + 151785 0.67 0.794238
Target:  5'- -gCCGcuGCACGCCaGACGCCgggugGUGUaCGa -3'
miRNA:   3'- gaGGCc-UGUGCGG-CUGCGGa----CACA-GC- -5'
10727 3' -59 NC_002794.1 + 147254 0.67 0.827567
Target:  5'- aCUCCGGGCAgacgcucgagcUGCCGugGCC---GUCc -3'
miRNA:   3'- -GAGGCCUGU-----------GCGGCugCGGacaCAGc -5'
10727 3' -59 NC_002794.1 + 143744 0.68 0.785556
Target:  5'- -gCCGGACGCGCCGccggggggcucCGCUcGUcGUCGg -3'
miRNA:   3'- gaGGCCUGUGCGGCu----------GCGGaCA-CAGC- -5'
10727 3' -59 NC_002794.1 + 137653 0.66 0.858324
Target:  5'- -gCCGGGC-CuCCGGCGCCgcugGUG-CGg -3'
miRNA:   3'- gaGGCCUGuGcGGCUGCGGa---CACaGC- -5'
10727 3' -59 NC_002794.1 + 137376 0.69 0.712255
Target:  5'- -gCCGGGCgaGCGCCGACGCggGUccgGUCu -3'
miRNA:   3'- gaGGCCUG--UGCGGCUGCGgaCA---CAGc -5'
10727 3' -59 NC_002794.1 + 134606 0.67 0.835514
Target:  5'- aCUCCGGAUccCGCCGAguugaccgccauCGCCUGccgGUUc -3'
miRNA:   3'- -GAGGCCUGu-GCGGCU------------GCGGACa--CAGc -5'
10727 3' -59 NC_002794.1 + 134405 0.67 0.793376
Target:  5'- aUCCGGcgccucgAgGCGCCGGCG-UUGUGUCc -3'
miRNA:   3'- gAGGCC-------UgUGCGGCUGCgGACACAGc -5'
10727 3' -59 NC_002794.1 + 131151 0.69 0.73111
Target:  5'- aUCCGGucGCACGCCagcacGGCGCCcGUcUCGa -3'
miRNA:   3'- gAGGCC--UGUGCGG-----CUGCGGaCAcAGC- -5'
10727 3' -59 NC_002794.1 + 123768 0.66 0.843294
Target:  5'- -cCCGG--GCGUgGACGCCUccGUGUUGg -3'
miRNA:   3'- gaGGCCugUGCGgCUGCGGA--CACAGC- -5'
10727 3' -59 NC_002794.1 + 121639 0.66 0.843294
Target:  5'- uCUCCGGGagaACGCCGuCGCCguaacgCGa -3'
miRNA:   3'- -GAGGCCUg--UGCGGCuGCGGacaca-GC- -5'
10727 3' -59 NC_002794.1 + 117276 0.66 0.872614
Target:  5'- aCUCCGcGACgcccuGCGCgGACaGCUgcggcGUGUCGa -3'
miRNA:   3'- -GAGGC-CUG-----UGCGgCUG-CGGa----CACAGC- -5'
10727 3' -59 NC_002794.1 + 114748 0.66 0.879469
Target:  5'- -gCCGGcgccGCcCGCCGGCGCCg--GUCc -3'
miRNA:   3'- gaGGCC----UGuGCGGCUGCGGacaCAGc -5'
10727 3' -59 NC_002794.1 + 102408 0.67 0.81946
Target:  5'- uUCCGcGACGCgGCCGugGCCgagGcCGc -3'
miRNA:   3'- gAGGC-CUGUG-CGGCugCGGacaCaGC- -5'
10727 3' -59 NC_002794.1 + 101441 0.67 0.835514
Target:  5'- aUCCGGGgACGCCGGCGCg------- -3'
miRNA:   3'- gAGGCCUgUGCGGCUGCGgacacagc -5'
10727 3' -59 NC_002794.1 + 100588 0.67 0.802788
Target:  5'- gCUCgGGccguGCGCGCCGAUcCCggggGUGUUGg -3'
miRNA:   3'- -GAGgCC----UGUGCGGCUGcGGa---CACAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.