miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10727 5' -55.5 NC_002794.1 + 34258 0.66 0.956822
Target:  5'- cGCCG-CAGGCGgaccgCGcgcaggCggCCAGCGCc -3'
miRNA:   3'- -CGGCuGUCCGCa----GCaua---Ga-GGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 100215 0.66 0.956822
Target:  5'- uGCuCGACgaGGGCGUCGagGUCUUCgAGguCg -3'
miRNA:   3'- -CG-GCUG--UCCGCAGCa-UAGAGG-UCguG- -5'
10727 5' -55.5 NC_002794.1 + 38612 0.66 0.95299
Target:  5'- gGCCgGACGGGCG-CGUcccgacUCgCCGGUGCg -3'
miRNA:   3'- -CGG-CUGUCCGCaGCAu-----AGaGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 182345 0.66 0.95299
Target:  5'- aGCgGACGGGCGggCGgGUgaCCGGgCGCa -3'
miRNA:   3'- -CGgCUGUCCGCa-GCaUAgaGGUC-GUG- -5'
10727 5' -55.5 NC_002794.1 + 142639 0.66 0.95299
Target:  5'- aGCCG-CAGGggcuCGUCGgGUUUCCAG-ACg -3'
miRNA:   3'- -CGGCuGUCC----GCAGCaUAGAGGUCgUG- -5'
10727 5' -55.5 NC_002794.1 + 41866 0.66 0.952595
Target:  5'- cGCCGGgcagggcCGGGCGcugccacgccaCGUAgcgCUCCAGCAg -3'
miRNA:   3'- -CGGCU-------GUCCGCa----------GCAUa--GAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 63490 0.66 0.952595
Target:  5'- cGUCGACGacgccgcGGCGUCGUcGUCcgcgacgccUCCcGCGCg -3'
miRNA:   3'- -CGGCUGU-------CCGCAGCA-UAG---------AGGuCGUG- -5'
10727 5' -55.5 NC_002794.1 + 107058 0.66 0.948936
Target:  5'- aGgCGGCGGGCG-CGgcgCcgCCGGCAUg -3'
miRNA:   3'- -CgGCUGUCCGCaGCauaGa-GGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 194941 0.66 0.948936
Target:  5'- uCCGACGGcGaCGUCGUcagCagCGGCACg -3'
miRNA:   3'- cGGCUGUC-C-GCAGCAua-GagGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 99961 0.66 0.948936
Target:  5'- cGCCGACGGcgccagucuguGCGUCaacGUCUUCGGC-Ca -3'
miRNA:   3'- -CGGCUGUC-----------CGCAGca-UAGAGGUCGuG- -5'
10727 5' -55.5 NC_002794.1 + 192250 0.66 0.948936
Target:  5'- cGCCGACGGcGCGguUCGcucGUCUCUcGCGa -3'
miRNA:   3'- -CGGCUGUC-CGC--AGCa--UAGAGGuCGUg -5'
10727 5' -55.5 NC_002794.1 + 114231 0.66 0.945094
Target:  5'- aGCCGAuCAGcGCGUCGagguggugaaagagcGUCUCCGGgGg -3'
miRNA:   3'- -CGGCU-GUC-CGCAGCa--------------UAGAGGUCgUg -5'
10727 5' -55.5 NC_002794.1 + 39675 0.66 0.944656
Target:  5'- uGCCGcGCGGuGCGcuucuUCGUcgC-CCGGCACc -3'
miRNA:   3'- -CGGC-UGUC-CGC-----AGCAuaGaGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 185763 0.66 0.944656
Target:  5'- cGCCGGCGcGGCcgccCGUcacacGUCggCCGGCGCg -3'
miRNA:   3'- -CGGCUGU-CCGca--GCA-----UAGa-GGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 8736 0.66 0.944656
Target:  5'- aCCGugGaGCG-CGUGUCUCgGGCGu -3'
miRNA:   3'- cGGCugUcCGCaGCAUAGAGgUCGUg -5'
10727 5' -55.5 NC_002794.1 + 139908 0.66 0.944656
Target:  5'- aGCCG-CAGGcCGUCGga----CGGCACg -3'
miRNA:   3'- -CGGCuGUCC-GCAGCauagagGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 55889 0.66 0.943772
Target:  5'- uGCaCGAUcauGGCGUUGgugcagucgucgAUCUCgGGCACg -3'
miRNA:   3'- -CG-GCUGu--CCGCAGCa-----------UAGAGgUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 31919 0.66 0.94288
Target:  5'- cGCCGACAGGaCGUCcagccgcgCC-GCACg -3'
miRNA:   3'- -CGGCUGUCC-GCAGcauaga--GGuCGUG- -5'
10727 5' -55.5 NC_002794.1 + 119587 0.66 0.940148
Target:  5'- cGCCGaACGucCGUCGcagUcgCUCCAGCGCc -3'
miRNA:   3'- -CGGC-UGUccGCAGC---AuaGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 141309 0.66 0.940148
Target:  5'- cGCCGGCGacggcaccGGCGUCGgcUCgguggCgAGCGa -3'
miRNA:   3'- -CGGCUGU--------CCGCAGCauAGa----GgUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.