miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10727 5' -55.5 NC_002794.1 + 99961 0.66 0.948936
Target:  5'- cGCCGACGGcgccagucuguGCGUCaacGUCUUCGGC-Ca -3'
miRNA:   3'- -CGGCUGUC-----------CGCAGca-UAGAGGUCGuG- -5'
10727 5' -55.5 NC_002794.1 + 101219 0.67 0.908239
Target:  5'- cCCGGCAGaugGUCGUGcccacguuucgCUCCGGCGCg -3'
miRNA:   3'- cGGCUGUCcg-CAGCAUa----------GAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 43021 0.67 0.925237
Target:  5'- uCCG-CAGGuCGUCGgc-CUCCAucGCGCg -3'
miRNA:   3'- cGGCuGUCC-GCAGCauaGAGGU--CGUG- -5'
10727 5' -55.5 NC_002794.1 + 95039 0.67 0.912391
Target:  5'- cGCCGGUggcggcgcccgAGGCGUaCGUggaaaaccugaccuGUCUCCAGUGCu -3'
miRNA:   3'- -CGGCUG-----------UCCGCA-GCA--------------UAGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 65964 0.67 0.925237
Target:  5'- -gCGGC-GGCGUCuc--CUCCGGCACc -3'
miRNA:   3'- cgGCUGuCCGCAGcauaGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 14453 0.67 0.935409
Target:  5'- uCCG-CGGGCGacCGUGUCgagCGGCGCg -3'
miRNA:   3'- cGGCuGUCCGCa-GCAUAGag-GUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 88080 0.67 0.93044
Target:  5'- gGCCGcgguuugaACGGgGCGUgGUGaugagCUCCGGCAUc -3'
miRNA:   3'- -CGGC--------UGUC-CGCAgCAUa----GAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 43806 0.67 0.935409
Target:  5'- cGCCGcucCGGGCccaGgcUCUCCAGCGa -3'
miRNA:   3'- -CGGCu--GUCCGcagCauAGAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 188340 0.67 0.935409
Target:  5'- cGCCGGC-GGCGcCGUcgCgcccgUCCGGCcgGCg -3'
miRNA:   3'- -CGGCUGuCCGCaGCAuaG-----AGGUCG--UG- -5'
10727 5' -55.5 NC_002794.1 + 106945 0.68 0.874662
Target:  5'- gGCCGGCGGcgccuggagacacGCGUCGccUCgcgcggcggCCGGCACg -3'
miRNA:   3'- -CGGCUGUC-------------CGCAGCauAGa--------GGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 37237 0.68 0.878206
Target:  5'- cGCCGAuCAGGuCGUCGacgCUCUcgcucuccgucggcgGGCGCg -3'
miRNA:   3'- -CGGCU-GUCC-GCAGCauaGAGG---------------UCGUG- -5'
10727 5' -55.5 NC_002794.1 + 71116 0.68 0.882388
Target:  5'- gGCCGGagAGGCGcUCGUucAUCUCCgucAGCGg -3'
miRNA:   3'- -CGGCUg-UCCGC-AGCA--UAGAGG---UCGUg -5'
10727 5' -55.5 NC_002794.1 + 145580 0.68 0.882388
Target:  5'- cGCCGACGGaGCGgCGgccggCUCCcgcggagucgGGCGCg -3'
miRNA:   3'- -CGGCUGUC-CGCaGCaua--GAGG----------UCGUG- -5'
10727 5' -55.5 NC_002794.1 + 146999 0.68 0.882388
Target:  5'- gGCCGACGucGGCGgcggCGgccg-CCGGCGCu -3'
miRNA:   3'- -CGGCUGU--CCGCa---GCauagaGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 144028 0.68 0.89576
Target:  5'- aGCCGA---GC--CGUAUCUCCGGCGCc -3'
miRNA:   3'- -CGGCUgucCGcaGCAUAGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 104790 0.68 0.889184
Target:  5'- cGCCGACAGGCGgugcugcuUCGcgAUggCCAGguCg -3'
miRNA:   3'- -CGGCUGUCCGC--------AGCa-UAgaGGUCguG- -5'
10727 5' -55.5 NC_002794.1 + 49025 0.68 0.889184
Target:  5'- gGCCG-C-GGCGUCG----UCCGGCGCg -3'
miRNA:   3'- -CGGCuGuCCGCAGCauagAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 32868 0.68 0.889184
Target:  5'- aGCCGGCGGGCGgcggCGgcggCggCGGCAUc -3'
miRNA:   3'- -CGGCUGUCCGCa---GCaua-GagGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 61829 0.68 0.902113
Target:  5'- cGCCGGCGgccGGCGUCacuccgCUCC-GCGCc -3'
miRNA:   3'- -CGGCUGU---CCGCAGcaua--GAGGuCGUG- -5'
10727 5' -55.5 NC_002794.1 + 119132 0.68 0.875375
Target:  5'- gGCCuGGCAGGCGuUCGggugGUCgCgCAGCAg -3'
miRNA:   3'- -CGG-CUGUCCGC-AGCa---UAGaG-GUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.