miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10727 5' -55.5 NC_002794.1 + 147931 0.7 0.820691
Target:  5'- -gCGACggGGGCGUCGUGuacgcguacUCUCCgggcuccgAGCGCg -3'
miRNA:   3'- cgGCUG--UCCGCAGCAU---------AGAGG--------UCGUG- -5'
10727 5' -55.5 NC_002794.1 + 12216 0.71 0.738855
Target:  5'- uGCCGGC-GGCGUCGg--CggcgCCGGCGg -3'
miRNA:   3'- -CGGCUGuCCGCAGCauaGa---GGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 50791 0.71 0.748426
Target:  5'- gGgCGGCGccuccucgcccGGCGUCGggcgCUCCGGCGCc -3'
miRNA:   3'- -CgGCUGU-----------CCGCAGCaua-GAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 110638 0.71 0.748426
Target:  5'- cGgCGGCGGG-GUCGgguuUCUCCGGCGg -3'
miRNA:   3'- -CgGCUGUCCgCAGCau--AGAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 77994 0.71 0.748426
Target:  5'- -aCGGCGGGCGUUGU---UCCGGCGg -3'
miRNA:   3'- cgGCUGUCCGCAGCAuagAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 125683 0.71 0.748426
Target:  5'- gGCUGACGGGCGaCGUGUUg-CuGCGCg -3'
miRNA:   3'- -CGGCUGUCCGCaGCAUAGagGuCGUG- -5'
10727 5' -55.5 NC_002794.1 + 190703 0.71 0.757898
Target:  5'- cCCGGCGcaGCGUCGgguUCUCCAGC-Cg -3'
miRNA:   3'- cGGCUGUc-CGCAGCau-AGAGGUCGuG- -5'
10727 5' -55.5 NC_002794.1 + 118019 0.72 0.679838
Target:  5'- cCUGGCAGGCGUagaucagCUCCAGCAg -3'
miRNA:   3'- cGGCUGUCCGCAgcaua--GAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 99258 0.72 0.709634
Target:  5'- cGCgGAgGGGC-UCGggggCUCCGGCGCg -3'
miRNA:   3'- -CGgCUgUCCGcAGCaua-GAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 113589 0.72 0.669818
Target:  5'- uGCaCGACGGcGCGgaGUuUCUCCAGCGCc -3'
miRNA:   3'- -CG-GCUGUC-CGCagCAuAGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 192681 0.73 0.659768
Target:  5'- cGCCGGCcGcCGUCGUacGUCUUCAGCAg -3'
miRNA:   3'- -CGGCUGuCcGCAGCA--UAGAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 37660 0.74 0.609355
Target:  5'- aGuuGGCGuGCGUucCGUAcuUCUCCAGCACg -3'
miRNA:   3'- -CggCUGUcCGCA--GCAU--AGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 186116 0.75 0.510546
Target:  5'- cGCCGcCGGGUcccCGgAUCUCCAGCACg -3'
miRNA:   3'- -CGGCuGUCCGca-GCaUAGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 137643 0.75 0.510546
Target:  5'- cCUGGCGGGCGcCGggcCUCCGGCGCc -3'
miRNA:   3'- cGGCUGUCCGCaGCauaGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 107090 0.75 0.539639
Target:  5'- aGCCGACGGGCGggggUGUGUCgcugcgagCC-GCGCu -3'
miRNA:   3'- -CGGCUGUCCGCa---GCAUAGa-------GGuCGUG- -5'
10727 5' -55.5 NC_002794.1 + 143721 0.75 0.529874
Target:  5'- cCCGGCGGGCGUCGUccUCgcccgCCGGaCGCg -3'
miRNA:   3'- cGGCUGUCCGCAGCAu-AGa----GGUC-GUG- -5'
10727 5' -55.5 NC_002794.1 + 189477 0.75 0.549464
Target:  5'- gGCCG-CGGGCGUCGUGUgcacCCAGCu- -3'
miRNA:   3'- -CGGCuGUCCGCAGCAUAga--GGUCGug -5'
10727 5' -55.5 NC_002794.1 + 116912 0.75 0.549464
Target:  5'- gGCCGGuCcGGCGUCGg--CUCCGGCGu -3'
miRNA:   3'- -CGGCU-GuCCGCAGCauaGAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 147620 0.76 0.500992
Target:  5'- aCUGGCAGGCGUCGgagaggguccgcUAUCUCCGcucgauGCGCg -3'
miRNA:   3'- cGGCUGUCCGCAGC------------AUAGAGGU------CGUG- -5'
10727 5' -55.5 NC_002794.1 + 188429 0.78 0.369132
Target:  5'- uGCCG-CAGGUccucGUCGUcccacGUCUCCAGCAUg -3'
miRNA:   3'- -CGGCuGUCCG----CAGCA-----UAGAGGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.