miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10727 5' -55.5 NC_002794.1 + 112661 0.7 0.776508
Target:  5'- gGCUcucGCAGGCGgCGUucGUCUCCAGCu- -3'
miRNA:   3'- -CGGc--UGUCCGCaGCA--UAGAGGUCGug -5'
10727 5' -55.5 NC_002794.1 + 148207 0.7 0.776508
Target:  5'- cGCCGGCGcGCGcUCGaucgGUCUCCGGUcgGCg -3'
miRNA:   3'- -CGGCUGUcCGC-AGCa---UAGAGGUCG--UG- -5'
10727 5' -55.5 NC_002794.1 + 185084 0.7 0.776508
Target:  5'- cGCCGuaGCAGGCGuaccagccggUCGUGUUguaCAGCAUg -3'
miRNA:   3'- -CGGC--UGUCCGC----------AGCAUAGag-GUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 34841 0.7 0.794617
Target:  5'- cGCCGgaGCGGGCGUCGgag--CgGGCGCc -3'
miRNA:   3'- -CGGC--UGUCCGCAGCauagaGgUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 183206 0.7 0.794617
Target:  5'- cGCCGGC-GGCG-CGUucGUCgCCAGCGa -3'
miRNA:   3'- -CGGCUGuCCGCaGCA--UAGaGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 139456 0.7 0.803462
Target:  5'- aUCGGCAGGuCGUCGUGcg-CCAGgACg -3'
miRNA:   3'- cGGCUGUCC-GCAGCAUagaGGUCgUG- -5'
10727 5' -55.5 NC_002794.1 + 147931 0.7 0.820691
Target:  5'- -gCGACggGGGCGUCGUGuacgcguacUCUCCgggcuccgAGCGCg -3'
miRNA:   3'- cgGCUG--UCCGCAGCAU---------AGAGG--------UCGUG- -5'
10727 5' -55.5 NC_002794.1 + 104892 0.7 0.820691
Target:  5'- gGCCGGCcgcgAGGCGcCGUGcugCUCgAGCAg -3'
miRNA:   3'- -CGGCUG----UCCGCaGCAUa--GAGgUCGUg -5'
10727 5' -55.5 NC_002794.1 + 135677 0.69 0.829059
Target:  5'- -aCGACGGGCaggggaGUCGUgacgGUCUCCagguAGCGCu -3'
miRNA:   3'- cgGCUGUCCG------CAGCA----UAGAGG----UCGUG- -5'
10727 5' -55.5 NC_002794.1 + 131273 0.69 0.829059
Target:  5'- cGCCGGCAccaccgccGGCGcCGUcgCUCCGcCGCc -3'
miRNA:   3'- -CGGCUGU--------CCGCaGCAuaGAGGUcGUG- -5'
10727 5' -55.5 NC_002794.1 + 57431 0.69 0.829059
Target:  5'- gGUCGGCAcGGCGccCGUca-UCCAGCACc -3'
miRNA:   3'- -CGGCUGU-CCGCa-GCAuagAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 86930 0.69 0.837254
Target:  5'- gGCgGGCAGGCGgggCGgga-UCCGGCGa -3'
miRNA:   3'- -CGgCUGUCCGCa--GCauagAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 119917 0.69 0.837254
Target:  5'- cGCCGgggacauccGCAcGGCGcCG-AUCUCCAGcCGCg -3'
miRNA:   3'- -CGGC---------UGU-CCGCaGCaUAGAGGUC-GUG- -5'
10727 5' -55.5 NC_002794.1 + 43365 0.69 0.856168
Target:  5'- gGCUcgGACAGGCuGUagucgcagagcacggCGUG-CUCCAGCACc -3'
miRNA:   3'- -CGG--CUGUCCG-CA---------------GCAUaGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 14652 0.69 0.860722
Target:  5'- cGCCGGCGccgcGGCGUCGguccgaCUCgCGGCGg -3'
miRNA:   3'- -CGGCUGU----CCGCAGCaua---GAG-GUCGUg -5'
10727 5' -55.5 NC_002794.1 + 78329 0.69 0.860722
Target:  5'- gGCgCGACGGGCGgaggCGccggaaUGUCggCCAGCAg -3'
miRNA:   3'- -CG-GCUGUCCGCa---GC------AUAGa-GGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 193824 0.69 0.860722
Target:  5'- cGCCGAC--GCGUCGcggCgCCGGCACu -3'
miRNA:   3'- -CGGCUGucCGCAGCauaGaGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 50378 0.69 0.860722
Target:  5'- gGCCGGCAGGaccgaGUCGUaaaacaaccccGUCU-UGGCACa -3'
miRNA:   3'- -CGGCUGUCCg----CAGCA-----------UAGAgGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 35777 0.69 0.860722
Target:  5'- aCCGucGCcGGCGUCG--UCUCCGGCGu -3'
miRNA:   3'- cGGC--UGuCCGCAGCauAGAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 60644 0.69 0.868152
Target:  5'- cGCCGGC-GGCGcCGgccacCCGGCGCg -3'
miRNA:   3'- -CGGCUGuCCGCaGCauagaGGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.