Results 61 - 80 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 185084 | 0.7 | 0.776508 |
Target: 5'- cGCCGuaGCAGGCGuaccagccggUCGUGUUguaCAGCAUg -3' miRNA: 3'- -CGGC--UGUCCGC----------AGCAUAGag-GUCGUG- -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 190703 | 0.71 | 0.757898 |
Target: 5'- cCCGGCGcaGCGUCGgguUCUCCAGC-Cg -3' miRNA: 3'- cGGCUGUc-CGCAGCau-AGAGGUCGuG- -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 125683 | 0.71 | 0.748426 |
Target: 5'- gGCUGACGGGCGaCGUGUUg-CuGCGCg -3' miRNA: 3'- -CGGCUGUCCGCaGCAUAGagGuCGUG- -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 77994 | 0.71 | 0.748426 |
Target: 5'- -aCGGCGGGCGUUGU---UCCGGCGg -3' miRNA: 3'- cgGCUGUCCGCAGCAuagAGGUCGUg -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 110638 | 0.71 | 0.748426 |
Target: 5'- cGgCGGCGGG-GUCGgguuUCUCCGGCGg -3' miRNA: 3'- -CgGCUGUCCgCAGCau--AGAGGUCGUg -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 50791 | 0.71 | 0.748426 |
Target: 5'- gGgCGGCGccuccucgcccGGCGUCGggcgCUCCGGCGCc -3' miRNA: 3'- -CgGCUGU-----------CCGCAGCaua-GAGGUCGUG- -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 12216 | 0.71 | 0.738855 |
Target: 5'- uGCCGGC-GGCGUCGg--CggcgCCGGCGg -3' miRNA: 3'- -CGGCUGuCCGCAGCauaGa---GGUCGUg -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 99258 | 0.72 | 0.709634 |
Target: 5'- cGCgGAgGGGC-UCGggggCUCCGGCGCg -3' miRNA: 3'- -CGgCUgUCCGcAGCaua-GAGGUCGUG- -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 118019 | 0.72 | 0.679838 |
Target: 5'- cCUGGCAGGCGUagaucagCUCCAGCAg -3' miRNA: 3'- cGGCUGUCCGCAgcaua--GAGGUCGUg -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 113589 | 0.72 | 0.669818 |
Target: 5'- uGCaCGACGGcGCGgaGUuUCUCCAGCGCc -3' miRNA: 3'- -CG-GCUGUC-CGCagCAuAGAGGUCGUG- -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 192681 | 0.73 | 0.659768 |
Target: 5'- cGCCGGCcGcCGUCGUacGUCUUCAGCAg -3' miRNA: 3'- -CGGCUGuCcGCAGCA--UAGAGGUCGUg -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 37660 | 0.74 | 0.609355 |
Target: 5'- aGuuGGCGuGCGUucCGUAcuUCUCCAGCACg -3' miRNA: 3'- -CggCUGUcCGCA--GCAU--AGAGGUCGUG- -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 189477 | 0.75 | 0.549464 |
Target: 5'- gGCCG-CGGGCGUCGUGUgcacCCAGCu- -3' miRNA: 3'- -CGGCuGUCCGCAGCAUAga--GGUCGug -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 116912 | 0.75 | 0.549464 |
Target: 5'- gGCCGGuCcGGCGUCGg--CUCCGGCGu -3' miRNA: 3'- -CGGCU-GuCCGCAGCauaGAGGUCGUg -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 107090 | 0.75 | 0.539639 |
Target: 5'- aGCCGACGGGCGggggUGUGUCgcugcgagCC-GCGCu -3' miRNA: 3'- -CGGCUGUCCGCa---GCAUAGa-------GGuCGUG- -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 143721 | 0.75 | 0.529874 |
Target: 5'- cCCGGCGGGCGUCGUccUCgcccgCCGGaCGCg -3' miRNA: 3'- cGGCUGUCCGCAGCAu-AGa----GGUC-GUG- -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 137643 | 0.75 | 0.510546 |
Target: 5'- cCUGGCGGGCGcCGggcCUCCGGCGCc -3' miRNA: 3'- cGGCUGUCCGCaGCauaGAGGUCGUG- -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 186116 | 0.75 | 0.510546 |
Target: 5'- cGCCGcCGGGUcccCGgAUCUCCAGCACg -3' miRNA: 3'- -CGGCuGUCCGca-GCaUAGAGGUCGUG- -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 147620 | 0.76 | 0.500992 |
Target: 5'- aCUGGCAGGCGUCGgagaggguccgcUAUCUCCGcucgauGCGCg -3' miRNA: 3'- cGGCUGUCCGCAGC------------AUAGAGGU------CGUG- -5' |
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10727 | 5' | -55.5 | NC_002794.1 | + | 188429 | 0.78 | 0.369132 |
Target: 5'- uGCCG-CAGGUccucGUCGUcccacGUCUCCAGCAUg -3' miRNA: 3'- -CGGCuGUCCG----CAGCA-----UAGAGGUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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