miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10727 5' -55.5 NC_002794.1 + 8736 0.66 0.944656
Target:  5'- aCCGugGaGCG-CGUGUCUCgGGCGu -3'
miRNA:   3'- cGGCugUcCGCaGCAUAGAGgUCGUg -5'
10727 5' -55.5 NC_002794.1 + 12216 0.71 0.738855
Target:  5'- uGCCGGC-GGCGUCGg--CggcgCCGGCGg -3'
miRNA:   3'- -CGGCUGuCCGCAGCauaGa---GGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 14453 0.67 0.935409
Target:  5'- uCCG-CGGGCGacCGUGUCgagCGGCGCg -3'
miRNA:   3'- cGGCuGUCCGCa-GCAUAGag-GUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 14652 0.69 0.860722
Target:  5'- cGCCGGCGccgcGGCGUCGguccgaCUCgCGGCGg -3'
miRNA:   3'- -CGGCUGU----CCGCAGCaua---GAG-GUCGUg -5'
10727 5' -55.5 NC_002794.1 + 31919 0.66 0.94288
Target:  5'- cGCCGACAGGaCGUCcagccgcgCC-GCACg -3'
miRNA:   3'- -CGGCUGUCC-GCAGcauaga--GGuCGUG- -5'
10727 5' -55.5 NC_002794.1 + 32868 0.68 0.889184
Target:  5'- aGCCGGCGGGCGgcggCGgcggCggCGGCAUc -3'
miRNA:   3'- -CGGCUGUCCGCa---GCaua-GagGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 34258 0.66 0.956822
Target:  5'- cGCCG-CAGGCGgaccgCGcgcaggCggCCAGCGCc -3'
miRNA:   3'- -CGGCuGUCCGCa----GCaua---Ga-GGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 34841 0.7 0.794617
Target:  5'- cGCCGgaGCGGGCGUCGgag--CgGGCGCc -3'
miRNA:   3'- -CGGC--UGUCCGCAGCauagaGgUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 35777 0.69 0.860722
Target:  5'- aCCGucGCcGGCGUCG--UCUCCGGCGu -3'
miRNA:   3'- cGGC--UGuCCGCAGCauAGAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 37237 0.68 0.878206
Target:  5'- cGCCGAuCAGGuCGUCGacgCUCUcgcucuccgucggcgGGCGCg -3'
miRNA:   3'- -CGGCU-GUCC-GCAGCauaGAGG---------------UCGUG- -5'
10727 5' -55.5 NC_002794.1 + 37660 0.74 0.609355
Target:  5'- aGuuGGCGuGCGUucCGUAcuUCUCCAGCACg -3'
miRNA:   3'- -CggCUGUcCGCA--GCAU--AGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 37765 0.69 0.868152
Target:  5'- cGCCGGCGGGagcggcCGUCGUcGUCggCCgcaGGCGCc -3'
miRNA:   3'- -CGGCUGUCC------GCAGCA-UAGa-GG---UCGUG- -5'
10727 5' -55.5 NC_002794.1 + 38612 0.66 0.95299
Target:  5'- gGCCgGACGGGCG-CGUcccgacUCgCCGGUGCg -3'
miRNA:   3'- -CGG-CUGUCCGCaGCAu-----AGaGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 39675 0.66 0.944656
Target:  5'- uGCCGcGCGGuGCGcuucuUCGUcgC-CCGGCACc -3'
miRNA:   3'- -CGGC-UGUC-CGC-----AGCAuaGaGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 41866 0.66 0.952595
Target:  5'- cGCCGGgcagggcCGGGCGcugccacgccaCGUAgcgCUCCAGCAg -3'
miRNA:   3'- -CGGCU-------GUCCGCa----------GCAUa--GAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 43021 0.67 0.925237
Target:  5'- uCCG-CAGGuCGUCGgc-CUCCAucGCGCg -3'
miRNA:   3'- cGGCuGUCC-GCAGCauaGAGGU--CGUG- -5'
10727 5' -55.5 NC_002794.1 + 43365 0.69 0.856168
Target:  5'- gGCUcgGACAGGCuGUagucgcagagcacggCGUG-CUCCAGCACc -3'
miRNA:   3'- -CGG--CUGUCCG-CA---------------GCAUaGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 43806 0.67 0.935409
Target:  5'- cGCCGcucCGGGCccaGgcUCUCCAGCGa -3'
miRNA:   3'- -CGGCu--GUCCGcagCauAGAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 49025 0.68 0.889184
Target:  5'- gGCCG-C-GGCGUCG----UCCGGCGCg -3'
miRNA:   3'- -CGGCuGuCCGCAGCauagAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 50378 0.69 0.860722
Target:  5'- gGCCGGCAGGaccgaGUCGUaaaacaaccccGUCU-UGGCACa -3'
miRNA:   3'- -CGGCUGUCCg----CAGCA-----------UAGAgGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.