miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10727 5' -55.5 NC_002794.1 + 50791 0.71 0.748426
Target:  5'- gGgCGGCGccuccucgcccGGCGUCGggcgCUCCGGCGCc -3'
miRNA:   3'- -CgGCUGU-----------CCGCAGCaua-GAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 55889 0.66 0.943772
Target:  5'- uGCaCGAUcauGGCGUUGgugcagucgucgAUCUCgGGCACg -3'
miRNA:   3'- -CG-GCUGu--CCGCAGCa-----------UAGAGgUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 57431 0.69 0.829059
Target:  5'- gGUCGGCAcGGCGccCGUca-UCCAGCACc -3'
miRNA:   3'- -CGGCUGU-CCGCa-GCAuagAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 60644 0.69 0.868152
Target:  5'- cGCCGGC-GGCGcCGgccacCCGGCGCg -3'
miRNA:   3'- -CGGCUGuCCGCaGCauagaGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 61829 0.68 0.902113
Target:  5'- cGCCGGCGgccGGCGUCacuccgCUCC-GCGCc -3'
miRNA:   3'- -CGGCUGU---CCGCAGcaua--GAGGuCGUG- -5'
10727 5' -55.5 NC_002794.1 + 63490 0.66 0.952595
Target:  5'- cGUCGACGacgccgcGGCGUCGUcGUCcgcgacgccUCCcGCGCg -3'
miRNA:   3'- -CGGCUGU-------CCGCAGCA-UAG---------AGGuCGUG- -5'
10727 5' -55.5 NC_002794.1 + 65964 0.67 0.925237
Target:  5'- -gCGGC-GGCGUCuc--CUCCGGCACc -3'
miRNA:   3'- cgGCUGuCCGCAGcauaGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 71116 0.68 0.882388
Target:  5'- gGCCGGagAGGCGcUCGUucAUCUCCgucAGCGg -3'
miRNA:   3'- -CGGCUg-UCCGC-AGCA--UAGAGG---UCGUg -5'
10727 5' -55.5 NC_002794.1 + 77994 0.71 0.748426
Target:  5'- -aCGGCGGGCGUUGU---UCCGGCGg -3'
miRNA:   3'- cgGCUGUCCGCAGCAuagAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 78329 0.69 0.860722
Target:  5'- gGCgCGACGGGCGgaggCGccggaaUGUCggCCAGCAg -3'
miRNA:   3'- -CG-GCUGUCCGCa---GC------AUAGa-GGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 86930 0.69 0.837254
Target:  5'- gGCgGGCAGGCGgggCGgga-UCCGGCGa -3'
miRNA:   3'- -CGgCUGUCCGCa--GCauagAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 88080 0.67 0.93044
Target:  5'- gGCCGcgguuugaACGGgGCGUgGUGaugagCUCCGGCAUc -3'
miRNA:   3'- -CGGC--------UGUC-CGCAgCAUa----GAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 95039 0.67 0.912391
Target:  5'- cGCCGGUggcggcgcccgAGGCGUaCGUggaaaaccugaccuGUCUCCAGUGCu -3'
miRNA:   3'- -CGGCUG-----------UCCGCA-GCA--------------UAGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 99258 0.72 0.709634
Target:  5'- cGCgGAgGGGC-UCGggggCUCCGGCGCg -3'
miRNA:   3'- -CGgCUgUCCGcAGCaua-GAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 99961 0.66 0.948936
Target:  5'- cGCCGACGGcgccagucuguGCGUCaacGUCUUCGGC-Ca -3'
miRNA:   3'- -CGGCUGUC-----------CGCAGca-UAGAGGUCGuG- -5'
10727 5' -55.5 NC_002794.1 + 100215 0.66 0.956822
Target:  5'- uGCuCGACgaGGGCGUCGagGUCUUCgAGguCg -3'
miRNA:   3'- -CG-GCUG--UCCGCAGCa-UAGAGG-UCguG- -5'
10727 5' -55.5 NC_002794.1 + 101219 0.67 0.908239
Target:  5'- cCCGGCAGaugGUCGUGcccacguuucgCUCCGGCGCg -3'
miRNA:   3'- cGGCUGUCcg-CAGCAUa----------GAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 104790 0.68 0.889184
Target:  5'- cGCCGACAGGCGgugcugcuUCGcgAUggCCAGguCg -3'
miRNA:   3'- -CGGCUGUCCGC--------AGCa-UAgaGGUCguG- -5'
10727 5' -55.5 NC_002794.1 + 104892 0.7 0.820691
Target:  5'- gGCCGGCcgcgAGGCGcCGUGcugCUCgAGCAg -3'
miRNA:   3'- -CGGCUG----UCCGCaGCAUa--GAGgUCGUg -5'
10727 5' -55.5 NC_002794.1 + 106945 0.68 0.874662
Target:  5'- gGCCGGCGGcgccuggagacacGCGUCGccUCgcgcggcggCCGGCACg -3'
miRNA:   3'- -CGGCUGUC-------------CGCAGCauAGa--------GGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.