miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10727 5' -55.5 NC_002794.1 + 194941 0.66 0.948936
Target:  5'- uCCGACGGcGaCGUCGUcagCagCGGCACg -3'
miRNA:   3'- cGGCUGUC-C-GCAGCAua-GagGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 193824 0.69 0.860722
Target:  5'- cGCCGAC--GCGUCGcggCgCCGGCACu -3'
miRNA:   3'- -CGGCUGucCGCAGCauaGaGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 192681 0.73 0.659768
Target:  5'- cGCCGGCcGcCGUCGUacGUCUUCAGCAg -3'
miRNA:   3'- -CGGCUGuCcGCAGCA--UAGAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 192250 0.66 0.948936
Target:  5'- cGCCGACGGcGCGguUCGcucGUCUCUcGCGa -3'
miRNA:   3'- -CGGCUGUC-CGC--AGCa--UAGAGGuCGUg -5'
10727 5' -55.5 NC_002794.1 + 190703 0.71 0.757898
Target:  5'- cCCGGCGcaGCGUCGgguUCUCCAGC-Cg -3'
miRNA:   3'- cGGCUGUc-CGCAGCau-AGAGGUCGuG- -5'
10727 5' -55.5 NC_002794.1 + 189477 0.75 0.549464
Target:  5'- gGCCG-CGGGCGUCGUGUgcacCCAGCu- -3'
miRNA:   3'- -CGGCuGUCCGCAGCAUAga--GGUCGug -5'
10727 5' -55.5 NC_002794.1 + 188429 0.78 0.369132
Target:  5'- uGCCG-CAGGUccucGUCGUcccacGUCUCCAGCAUg -3'
miRNA:   3'- -CGGCuGUCCG----CAGCA-----UAGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 188340 0.67 0.935409
Target:  5'- cGCCGGC-GGCGcCGUcgCgcccgUCCGGCcgGCg -3'
miRNA:   3'- -CGGCUGuCCGCaGCAuaG-----AGGUCG--UG- -5'
10727 5' -55.5 NC_002794.1 + 186116 0.75 0.510546
Target:  5'- cGCCGcCGGGUcccCGgAUCUCCAGCACg -3'
miRNA:   3'- -CGGCuGUCCGca-GCaUAGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 185763 0.66 0.944656
Target:  5'- cGCCGGCGcGGCcgccCGUcacacGUCggCCGGCGCg -3'
miRNA:   3'- -CGGCUGU-CCGca--GCA-----UAGa-GGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 185172 0.66 0.940148
Target:  5'- cGCCGGCGcGGCG-CG-GUCggcgcggUCGGCGCg -3'
miRNA:   3'- -CGGCUGU-CCGCaGCaUAGa------GGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 185084 0.7 0.776508
Target:  5'- cGCCGuaGCAGGCGuaccagccggUCGUGUUguaCAGCAUg -3'
miRNA:   3'- -CGGC--UGUCCGC----------AGCAUAGag-GUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 183206 0.7 0.794617
Target:  5'- cGCCGGC-GGCG-CGUucGUCgCCAGCGa -3'
miRNA:   3'- -CGGCUGuCCGCaGCA--UAGaGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 182345 0.66 0.95299
Target:  5'- aGCgGACGGGCGggCGgGUgaCCGGgCGCa -3'
miRNA:   3'- -CGgCUGUCCGCa-GCaUAgaGGUC-GUG- -5'
10727 5' -55.5 NC_002794.1 + 152988 1.12 0.002509
Target:  5'- cGCCGACAGGCGUCGUAUCUCCAGCACg -3'
miRNA:   3'- -CGGCUGUCCGCAGCAUAGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 148207 0.7 0.776508
Target:  5'- cGCCGGCGcGCGcUCGaucgGUCUCCGGUcgGCg -3'
miRNA:   3'- -CGGCUGUcCGC-AGCa---UAGAGGUCG--UG- -5'
10727 5' -55.5 NC_002794.1 + 147931 0.7 0.820691
Target:  5'- -gCGACggGGGCGUCGUGuacgcguacUCUCCgggcuccgAGCGCg -3'
miRNA:   3'- cgGCUG--UCCGCAGCAU---------AGAGG--------UCGUG- -5'
10727 5' -55.5 NC_002794.1 + 147620 0.76 0.500992
Target:  5'- aCUGGCAGGCGUCGgagaggguccgcUAUCUCCGcucgauGCGCg -3'
miRNA:   3'- cGGCUGUCCGCAGC------------AUAGAGGU------CGUG- -5'
10727 5' -55.5 NC_002794.1 + 146999 0.68 0.882388
Target:  5'- gGCCGACGucGGCGgcggCGgccg-CCGGCGCu -3'
miRNA:   3'- -CGGCUGU--CCGCa---GCauagaGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 145580 0.68 0.882388
Target:  5'- cGCCGACGGaGCGgCGgccggCUCCcgcggagucgGGCGCg -3'
miRNA:   3'- -CGGCUGUC-CGCaGCaua--GAGG----------UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.