miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10727 5' -55.5 NC_002794.1 + 144028 0.68 0.89576
Target:  5'- aGCCGA---GC--CGUAUCUCCGGCGCc -3'
miRNA:   3'- -CGGCUgucCGcaGCAUAGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 143721 0.75 0.529874
Target:  5'- cCCGGCGGGCGUCGUccUCgcccgCCGGaCGCg -3'
miRNA:   3'- cGGCUGUCCGCAGCAu-AGa----GGUC-GUG- -5'
10727 5' -55.5 NC_002794.1 + 142639 0.66 0.95299
Target:  5'- aGCCG-CAGGggcuCGUCGgGUUUCCAG-ACg -3'
miRNA:   3'- -CGGCuGUCC----GCAGCaUAGAGGUCgUG- -5'
10727 5' -55.5 NC_002794.1 + 141309 0.66 0.940148
Target:  5'- cGCCGGCGacggcaccGGCGUCGgcUCgguggCgAGCGa -3'
miRNA:   3'- -CGGCUGU--------CCGCAGCauAGa----GgUCGUg -5'
10727 5' -55.5 NC_002794.1 + 139908 0.66 0.944656
Target:  5'- aGCCG-CAGGcCGUCGga----CGGCACg -3'
miRNA:   3'- -CGGCuGUCC-GCAGCauagagGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 139456 0.7 0.803462
Target:  5'- aUCGGCAGGuCGUCGUGcg-CCAGgACg -3'
miRNA:   3'- cGGCUGUCC-GCAGCAUagaGGUCgUG- -5'
10727 5' -55.5 NC_002794.1 + 137643 0.75 0.510546
Target:  5'- cCUGGCGGGCGcCGggcCUCCGGCGCc -3'
miRNA:   3'- cGGCUGUCCGCaGCauaGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 135677 0.69 0.829059
Target:  5'- -aCGACGGGCaggggaGUCGUgacgGUCUCCagguAGCGCu -3'
miRNA:   3'- cgGCUGUCCG------CAGCA----UAGAGG----UCGUG- -5'
10727 5' -55.5 NC_002794.1 + 131273 0.69 0.829059
Target:  5'- cGCCGGCAccaccgccGGCGcCGUcgCUCCGcCGCc -3'
miRNA:   3'- -CGGCUGU--------CCGCaGCAuaGAGGUcGUG- -5'
10727 5' -55.5 NC_002794.1 + 125683 0.71 0.748426
Target:  5'- gGCUGACGGGCGaCGUGUUg-CuGCGCg -3'
miRNA:   3'- -CGGCUGUCCGCaGCAUAGagGuCGUG- -5'
10727 5' -55.5 NC_002794.1 + 119917 0.69 0.837254
Target:  5'- cGCCGgggacauccGCAcGGCGcCG-AUCUCCAGcCGCg -3'
miRNA:   3'- -CGGC---------UGU-CCGCaGCaUAGAGGUC-GUG- -5'
10727 5' -55.5 NC_002794.1 + 119587 0.66 0.940148
Target:  5'- cGCCGaACGucCGUCGcagUcgCUCCAGCGCc -3'
miRNA:   3'- -CGGC-UGUccGCAGC---AuaGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 119132 0.68 0.875375
Target:  5'- gGCCuGGCAGGCGuUCGggugGUCgCgCAGCAg -3'
miRNA:   3'- -CGG-CUGUCCGC-AGCa---UAGaG-GUCGUg -5'
10727 5' -55.5 NC_002794.1 + 118019 0.72 0.679838
Target:  5'- cCUGGCAGGCGUagaucagCUCCAGCAg -3'
miRNA:   3'- cGGCUGUCCGCAgcaua--GAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 116912 0.75 0.549464
Target:  5'- gGCCGGuCcGGCGUCGg--CUCCGGCGu -3'
miRNA:   3'- -CGGCU-GuCCGCAGCauaGAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 114231 0.66 0.945094
Target:  5'- aGCCGAuCAGcGCGUCGagguggugaaagagcGUCUCCGGgGg -3'
miRNA:   3'- -CGGCU-GUC-CGCAGCa--------------UAGAGGUCgUg -5'
10727 5' -55.5 NC_002794.1 + 113589 0.72 0.669818
Target:  5'- uGCaCGACGGcGCGgaGUuUCUCCAGCGCc -3'
miRNA:   3'- -CG-GCUGUC-CGCagCAuAGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 112661 0.7 0.776508
Target:  5'- gGCUcucGCAGGCGgCGUucGUCUCCAGCu- -3'
miRNA:   3'- -CGGc--UGUCCGCaGCA--UAGAGGUCGug -5'
10727 5' -55.5 NC_002794.1 + 110638 0.71 0.748426
Target:  5'- cGgCGGCGGG-GUCGgguuUCUCCGGCGg -3'
miRNA:   3'- -CgGCUGUCCgCAGCau--AGAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 107090 0.75 0.539639
Target:  5'- aGCCGACGGGCGggggUGUGUCgcugcgagCC-GCGCu -3'
miRNA:   3'- -CGGCUGUCCGCa---GCAUAGa-------GGuCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.