miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10727 5' -55.5 NC_002794.1 + 192250 0.66 0.948936
Target:  5'- cGCCGACGGcGCGguUCGcucGUCUCUcGCGa -3'
miRNA:   3'- -CGGCUGUC-CGC--AGCa--UAGAGGuCGUg -5'
10727 5' -55.5 NC_002794.1 + 142639 0.66 0.95299
Target:  5'- aGCCG-CAGGggcuCGUCGgGUUUCCAG-ACg -3'
miRNA:   3'- -CGGCuGUCC----GCAGCaUAGAGGUCgUG- -5'
10727 5' -55.5 NC_002794.1 + 182345 0.66 0.95299
Target:  5'- aGCgGACGGGCGggCGgGUgaCCGGgCGCa -3'
miRNA:   3'- -CGgCUGUCCGCa-GCaUAgaGGUC-GUG- -5'
10727 5' -55.5 NC_002794.1 + 38612 0.66 0.95299
Target:  5'- gGCCgGACGGGCG-CGUcccgacUCgCCGGUGCg -3'
miRNA:   3'- -CGG-CUGUCCGCaGCAu-----AGaGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 100215 0.66 0.956822
Target:  5'- uGCuCGACgaGGGCGUCGagGUCUUCgAGguCg -3'
miRNA:   3'- -CG-GCUG--UCCGCAGCa-UAGAGG-UCguG- -5'
10727 5' -55.5 NC_002794.1 + 185763 0.66 0.944656
Target:  5'- cGCCGGCGcGGCcgccCGUcacacGUCggCCGGCGCg -3'
miRNA:   3'- -CGGCUGU-CCGca--GCA-----UAGa-GGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 39675 0.66 0.944656
Target:  5'- uGCCGcGCGGuGCGcuucuUCGUcgC-CCGGCACc -3'
miRNA:   3'- -CGGC-UGUC-CGC-----AGCAuaGaGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 101219 0.67 0.908239
Target:  5'- cCCGGCAGaugGUCGUGcccacguuucgCUCCGGCGCg -3'
miRNA:   3'- cGGCUGUCcg-CAGCAUa----------GAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 43021 0.67 0.925237
Target:  5'- uCCG-CAGGuCGUCGgc-CUCCAucGCGCg -3'
miRNA:   3'- cGGCuGUCC-GCAGCauaGAGGU--CGUG- -5'
10727 5' -55.5 NC_002794.1 + 95039 0.67 0.912391
Target:  5'- cGCCGGUggcggcgcccgAGGCGUaCGUggaaaaccugaccuGUCUCCAGUGCu -3'
miRNA:   3'- -CGGCUG-----------UCCGCA-GCA--------------UAGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 65964 0.67 0.925237
Target:  5'- -gCGGC-GGCGUCuc--CUCCGGCACc -3'
miRNA:   3'- cgGCUGuCCGCAGcauaGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 14453 0.67 0.935409
Target:  5'- uCCG-CGGGCGacCGUGUCgagCGGCGCg -3'
miRNA:   3'- cGGCuGUCCGCa-GCAUAGag-GUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 88080 0.67 0.93044
Target:  5'- gGCCGcgguuugaACGGgGCGUgGUGaugagCUCCGGCAUc -3'
miRNA:   3'- -CGGC--------UGUC-CGCAgCAUa----GAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 43806 0.67 0.935409
Target:  5'- cGCCGcucCGGGCccaGgcUCUCCAGCGa -3'
miRNA:   3'- -CGGCu--GUCCGcagCauAGAGGUCGUg -5'
10727 5' -55.5 NC_002794.1 + 188340 0.67 0.935409
Target:  5'- cGCCGGC-GGCGcCGUcgCgcccgUCCGGCcgGCg -3'
miRNA:   3'- -CGGCUGuCCGCaGCAuaG-----AGGUCG--UG- -5'
10727 5' -55.5 NC_002794.1 + 141309 0.66 0.940148
Target:  5'- cGCCGGCGacggcaccGGCGUCGgcUCgguggCgAGCGa -3'
miRNA:   3'- -CGGCUGU--------CCGCAGCauAGa----GgUCGUg -5'
10727 5' -55.5 NC_002794.1 + 119587 0.66 0.940148
Target:  5'- cGCCGaACGucCGUCGcagUcgCUCCAGCGCc -3'
miRNA:   3'- -CGGC-UGUccGCAGC---AuaGAGGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 31919 0.66 0.94288
Target:  5'- cGCCGACAGGaCGUCcagccgcgCC-GCACg -3'
miRNA:   3'- -CGGCUGUCC-GCAGcauaga--GGuCGUG- -5'
10727 5' -55.5 NC_002794.1 + 185172 0.66 0.940148
Target:  5'- cGCCGGCGcGGCG-CG-GUCggcgcggUCGGCGCg -3'
miRNA:   3'- -CGGCUGU-CCGCaGCaUAGa------GGUCGUG- -5'
10727 5' -55.5 NC_002794.1 + 55889 0.66 0.943772
Target:  5'- uGCaCGAUcauGGCGUUGgugcagucgucgAUCUCgGGCACg -3'
miRNA:   3'- -CG-GCUGu--CCGCAGCa-----------UAGAGgUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.