Results 61 - 80 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 119587 | 0.66 | 0.940148 |
Target: 5'- cGCCGaACGucCGUCGcagUcgCUCCAGCGCc -3' miRNA: 3'- -CGGC-UGUccGCAGC---AuaGAGGUCGUG- -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 141309 | 0.66 | 0.940148 |
Target: 5'- cGCCGGCGacggcaccGGCGUCGgcUCgguggCgAGCGa -3' miRNA: 3'- -CGGCUGU--------CCGCAGCauAGa----GgUCGUg -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 49025 | 0.68 | 0.889184 |
Target: 5'- gGCCG-C-GGCGUCG----UCCGGCGCg -3' miRNA: 3'- -CGGCuGuCCGCAGCauagAGGUCGUG- -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 104790 | 0.68 | 0.889184 |
Target: 5'- cGCCGACAGGCGgugcugcuUCGcgAUggCCAGguCg -3' miRNA: 3'- -CGGCUGUCCGC--------AGCa-UAgaGGUCguG- -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 144028 | 0.68 | 0.89576 |
Target: 5'- aGCCGA---GC--CGUAUCUCCGGCGCc -3' miRNA: 3'- -CGGCUgucCGcaGCAUAGAGGUCGUG- -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 146999 | 0.68 | 0.882388 |
Target: 5'- gGCCGACGucGGCGgcggCGgccg-CCGGCGCu -3' miRNA: 3'- -CGGCUGU--CCGCa---GCauagaGGUCGUG- -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 145580 | 0.68 | 0.882388 |
Target: 5'- cGCCGACGGaGCGgCGgccggCUCCcgcggagucgGGCGCg -3' miRNA: 3'- -CGGCUGUC-CGCaGCaua--GAGG----------UCGUG- -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 71116 | 0.68 | 0.882388 |
Target: 5'- gGCCGGagAGGCGcUCGUucAUCUCCgucAGCGg -3' miRNA: 3'- -CGGCUg-UCCGC-AGCA--UAGAGG---UCGUg -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 37237 | 0.68 | 0.878206 |
Target: 5'- cGCCGAuCAGGuCGUCGacgCUCUcgcucuccgucggcgGGCGCg -3' miRNA: 3'- -CGGCU-GUCC-GCAGCauaGAGG---------------UCGUG- -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 60644 | 0.69 | 0.868152 |
Target: 5'- cGCCGGC-GGCGcCGgccacCCGGCGCg -3' miRNA: 3'- -CGGCUGuCCGCaGCauagaGGUCGUG- -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 32868 | 0.68 | 0.889184 |
Target: 5'- aGCCGGCGGGCGgcggCGgcggCggCGGCAUc -3' miRNA: 3'- -CGGCUGUCCGCa---GCaua-GagGUCGUG- -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 61829 | 0.68 | 0.902113 |
Target: 5'- cGCCGGCGgccGGCGUCacuccgCUCC-GCGCc -3' miRNA: 3'- -CGGCUGU---CCGCAGcaua--GAGGuCGUG- -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 188340 | 0.67 | 0.935409 |
Target: 5'- cGCCGGC-GGCGcCGUcgCgcccgUCCGGCcgGCg -3' miRNA: 3'- -CGGCUGuCCGCaGCAuaG-----AGGUCG--UG- -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 43806 | 0.67 | 0.935409 |
Target: 5'- cGCCGcucCGGGCccaGgcUCUCCAGCGa -3' miRNA: 3'- -CGGCu--GUCCGcagCauAGAGGUCGUg -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 88080 | 0.67 | 0.93044 |
Target: 5'- gGCCGcgguuugaACGGgGCGUgGUGaugagCUCCGGCAUc -3' miRNA: 3'- -CGGC--------UGUC-CGCAgCAUa----GAGGUCGUG- -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 14453 | 0.67 | 0.935409 |
Target: 5'- uCCG-CGGGCGacCGUGUCgagCGGCGCg -3' miRNA: 3'- cGGCuGUCCGCa-GCAUAGag-GUCGUG- -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 65964 | 0.67 | 0.925237 |
Target: 5'- -gCGGC-GGCGUCuc--CUCCGGCACc -3' miRNA: 3'- cgGCUGuCCGCAGcauaGAGGUCGUG- -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 95039 | 0.67 | 0.912391 |
Target: 5'- cGCCGGUggcggcgcccgAGGCGUaCGUggaaaaccugaccuGUCUCCAGUGCu -3' miRNA: 3'- -CGGCUG-----------UCCGCA-GCA--------------UAGAGGUCGUG- -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 43021 | 0.67 | 0.925237 |
Target: 5'- uCCG-CAGGuCGUCGgc-CUCCAucGCGCg -3' miRNA: 3'- cGGCuGUCC-GCAGCauaGAGGU--CGUG- -5' |
|||||||
10727 | 5' | -55.5 | NC_002794.1 | + | 101219 | 0.67 | 0.908239 |
Target: 5'- cCCGGCAGaugGUCGUGcccacguuucgCUCCGGCGCg -3' miRNA: 3'- cGGCUGUCcg-CAGCAUa----------GAGGUCGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home