miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 3' -53.1 NC_002794.1 + 37093 0.66 0.981682
Target:  5'- cGUUGaGCCGGUAcucGUUcaGCGuCACGGCg -3'
miRNA:   3'- uCAACaCGGUCGU---CAA--CGCuGUGCUG- -5'
10728 3' -53.1 NC_002794.1 + 183217 0.66 0.979525
Target:  5'- cGUUcGUcGCCAGCGaccagGCGACcCGACa -3'
miRNA:   3'- uCAA-CA-CGGUCGUcaa--CGCUGuGCUG- -5'
10728 3' -53.1 NC_002794.1 + 167162 0.66 0.979525
Target:  5'- -----cGCCGGCguaugGGUgGCGAUGCGACg -3'
miRNA:   3'- ucaacaCGGUCG-----UCAaCGCUGUGCUG- -5'
10728 3' -53.1 NC_002794.1 + 141435 0.66 0.974652
Target:  5'- cGGggGcGCCGGgggcgcCGGgaGCGGCGCGGCg -3'
miRNA:   3'- -UCaaCaCGGUC------GUCaaCGCUGUGCUG- -5'
10728 3' -53.1 NC_002794.1 + 126402 0.66 0.974652
Target:  5'- cGgcGUGCgCGGCGGUcGCGAUcUGGCu -3'
miRNA:   3'- uCaaCACG-GUCGUCAaCGCUGuGCUG- -5'
10728 3' -53.1 NC_002794.1 + 66417 0.67 0.971922
Target:  5'- ---cGUGCgaagaCGGCGGUUGCGAC-CGuCg -3'
miRNA:   3'- ucaaCACG-----GUCGUCAACGCUGuGCuG- -5'
10728 3' -53.1 NC_002794.1 + 65718 0.67 0.968985
Target:  5'- cGGUUcaucGCCAGCAGUUGCcguccGGCcucCGACg -3'
miRNA:   3'- -UCAAca--CGGUCGUCAACG-----CUGu--GCUG- -5'
10728 3' -53.1 NC_002794.1 + 56309 0.67 0.965837
Target:  5'- cGGUcgcgGUcGCUGGCGGccguggccgGCGACGCGGCg -3'
miRNA:   3'- -UCAa---CA-CGGUCGUCaa-------CGCUGUGCUG- -5'
10728 3' -53.1 NC_002794.1 + 37745 0.67 0.965837
Target:  5'- -----cGCCGGCg---GCGGCGCGGCg -3'
miRNA:   3'- ucaacaCGGUCGucaaCGCUGUGCUG- -5'
10728 3' -53.1 NC_002794.1 + 131020 0.67 0.96247
Target:  5'- -----gGUCGGUGGUcgUGCGGCGCGGCc -3'
miRNA:   3'- ucaacaCGGUCGUCA--ACGCUGUGCUG- -5'
10728 3' -53.1 NC_002794.1 + 70856 0.67 0.962121
Target:  5'- ---cGUGCCGGCcuccuccGGcgGCGGCAgCGGCg -3'
miRNA:   3'- ucaaCACGGUCG-------UCaaCGCUGU-GCUG- -5'
10728 3' -53.1 NC_002794.1 + 137607 0.67 0.958879
Target:  5'- -----cGCCGGCGGUcGCGGCggcggugcccACGACg -3'
miRNA:   3'- ucaacaCGGUCGUCAaCGCUG----------UGCUG- -5'
10728 3' -53.1 NC_002794.1 + 33874 0.67 0.956614
Target:  5'- -----aGCCAGCGGaUcguggagcucauggaGCGGCACGACa -3'
miRNA:   3'- ucaacaCGGUCGUCaA---------------CGCUGUGCUG- -5'
10728 3' -53.1 NC_002794.1 + 130469 0.68 0.951005
Target:  5'- -----cGCUGGCGGcUUGCGuGCGCGACa -3'
miRNA:   3'- ucaacaCGGUCGUC-AACGC-UGUGCUG- -5'
10728 3' -53.1 NC_002794.1 + 149737 0.68 0.946713
Target:  5'- cGgcGUGCCGGUGGa-GCGGCGgGACc -3'
miRNA:   3'- uCaaCACGGUCGUCaaCGCUGUgCUG- -5'
10728 3' -53.1 NC_002794.1 + 65920 0.68 0.942182
Target:  5'- cGUcGUcGCCGGCGGcgGUGGCGuCGGCg -3'
miRNA:   3'- uCAaCA-CGGUCGUCaaCGCUGU-GCUG- -5'
10728 3' -53.1 NC_002794.1 + 175583 0.68 0.932387
Target:  5'- cGGUgGUGUCAGUGGagcuugGCGAUGCGAUa -3'
miRNA:   3'- -UCAaCACGGUCGUCaa----CGCUGUGCUG- -5'
10728 3' -53.1 NC_002794.1 + 190424 0.69 0.92161
Target:  5'- cAGUcca-CCAGCAGcaggUGCGACACGAa -3'
miRNA:   3'- -UCAacacGGUCGUCa---ACGCUGUGCUg -5'
10728 3' -53.1 NC_002794.1 + 130206 0.69 0.90985
Target:  5'- gAGUUG-GCCGuGCAG--GCGAC-CGACg -3'
miRNA:   3'- -UCAACaCGGU-CGUCaaCGCUGuGCUG- -5'
10728 3' -53.1 NC_002794.1 + 108309 0.69 0.90862
Target:  5'- cGUUGcGCCGGCGGUgggucuuggacgGCGGCGCa-- -3'
miRNA:   3'- uCAACaCGGUCGUCAa-----------CGCUGUGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.