miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 16406 0.65 0.90901
Target:  5'- gUCGUCGACucuuggcguuaccgGaCCcGACGCcGAguCCGCGCu -3'
miRNA:   3'- -GGCAGCUG--------------C-GGuCUGCGaCU--GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 14615 0.66 0.904931
Target:  5'- aCCG-CGACgggGCCggAGACGg-GGCCGgGCa -3'
miRNA:   3'- -GGCaGCUG---CGG--UCUGCgaCUGGCgCG- -5'
10728 5' -58.5 NC_002794.1 + 88708 0.66 0.904931
Target:  5'- aCCGUCGGgGUCgauugGGGCGgUGACCuCGg -3'
miRNA:   3'- -GGCAGCUgCGG-----UCUGCgACUGGcGCg -5'
10728 5' -58.5 NC_002794.1 + 38499 0.66 0.904931
Target:  5'- gCGgCGGCGCCGGuCGCc-GCCGCcuccGCg -3'
miRNA:   3'- gGCaGCUGCGGUCuGCGacUGGCG----CG- -5'
10728 5' -58.5 NC_002794.1 + 36953 0.66 0.904931
Target:  5'- gUCGcgCGGCGgCAGGCagucGCgcaggagGAUCGCGCg -3'
miRNA:   3'- -GGCa-GCUGCgGUCUG----CGa------CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 192555 0.66 0.904931
Target:  5'- cCCGUCGuaGCGgCAGGCGCa---CGCGa -3'
miRNA:   3'- -GGCAGC--UGCgGUCUGCGacugGCGCg -5'
10728 5' -58.5 NC_002794.1 + 63907 0.66 0.904931
Target:  5'- gCCGUCGcucGCGCCGcGAcCGCcgcccGGCCG-GCg -3'
miRNA:   3'- -GGCAGC---UGCGGU-CU-GCGa----CUGGCgCG- -5'
10728 5' -58.5 NC_002794.1 + 50765 0.66 0.904931
Target:  5'- cCCGggCGGCGgCGacGGCGCgucucgGGCgGCGCc -3'
miRNA:   3'- -GGCa-GCUGCgGU--CUGCGa-----CUGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 23212 0.66 0.903151
Target:  5'- aCCGUCacguccagggacauGAaGCCcgGGGCGUUG-CCGUGCg -3'
miRNA:   3'- -GGCAG--------------CUgCGG--UCUGCGACuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 94994 0.66 0.898924
Target:  5'- uCUGUCGcCGCUugcuGuCGCUGAUgGgGCg -3'
miRNA:   3'- -GGCAGCuGCGGu---CuGCGACUGgCgCG- -5'
10728 5' -58.5 NC_002794.1 + 182994 0.66 0.898924
Target:  5'- gCCGgCGcuuCGCCgcGGGCGCc--CCGCGCg -3'
miRNA:   3'- -GGCaGCu--GCGG--UCUGCGacuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 19784 0.66 0.898924
Target:  5'- uCCGggugcuccUGACGCUGcucCGCUcgGACCGCGCg -3'
miRNA:   3'- -GGCa-------GCUGCGGUcu-GCGA--CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 149658 0.66 0.898924
Target:  5'- gCCGagGAgGCCgagcggGGGCGCgucgcgcucgacUGGCCGCGg -3'
miRNA:   3'- -GGCagCUgCGG------UCUGCG------------ACUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 34246 0.66 0.898924
Target:  5'- aCGcgCGGCuGCC-GcCGCaggcgGACCGCGCg -3'
miRNA:   3'- gGCa-GCUG-CGGuCuGCGa----CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 34329 0.66 0.898924
Target:  5'- gCCGUC--CGCaAGGCGaC-GGCCGCGCc -3'
miRNA:   3'- -GGCAGcuGCGgUCUGC-GaCUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 107390 0.66 0.898924
Target:  5'- gCCGUCGG-GCU-GGCGCUGAUCcucgGCGg -3'
miRNA:   3'- -GGCAGCUgCGGuCUGCGACUGG----CGCg -5'
10728 5' -58.5 NC_002794.1 + 106066 0.66 0.898924
Target:  5'- aCGUgGGcCGCCGGcACGCggcuuuuCUGCGCu -3'
miRNA:   3'- gGCAgCU-GCGGUC-UGCGacu----GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 82930 0.66 0.898924
Target:  5'- gCCGUCGcCGCUccGACuccagGCccGCCGCGCa -3'
miRNA:   3'- -GGCAGCuGCGGu-CUG-----CGacUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 127339 0.66 0.898924
Target:  5'- gCGcCGcUGCCgAGACGCUcgcggcGGCgGCGCg -3'
miRNA:   3'- gGCaGCuGCGG-UCUGCGA------CUGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 43446 0.66 0.898924
Target:  5'- gUGggggCGAUGUCgaAGugGCUGACCuuGCa -3'
miRNA:   3'- gGCa---GCUGCGG--UCugCGACUGGcgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.