Results 61 - 80 of 394 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10728 | 5' | -58.5 | NC_002794.1 | + | 44242 | 0.66 | 0.898924 |
Target: 5'- gCCGggCGGCucgguGCCGGGCgGCUcGGCCGC-Cg -3' miRNA: 3'- -GGCa-GCUG-----CGGUCUG-CGA-CUGGCGcG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 81319 | 0.66 | 0.892709 |
Target: 5'- cCCGUCGGCcaaGCCgcGGuACGCUccGCCGuCGCc -3' miRNA: 3'- -GGCAGCUG---CGG--UC-UGCGAc-UGGC-GCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 194529 | 0.66 | 0.892709 |
Target: 5'- gCCGgcccagcagCGcCGCCAGcACGC---CCGCGCg -3' miRNA: 3'- -GGCa--------GCuGCGGUC-UGCGacuGGCGCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 120103 | 0.66 | 0.892709 |
Target: 5'- nCCGagCG-CGCC--GCGCgUGACgCGCGCg -3' miRNA: 3'- -GGCa-GCuGCGGucUGCG-ACUG-GCGCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 121800 | 0.66 | 0.892709 |
Target: 5'- aCCG-CGACcgGCCGG-CGCcuGCCGCuGCa -3' miRNA: 3'- -GGCaGCUG--CGGUCuGCGacUGGCG-CG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 146684 | 0.66 | 0.892709 |
Target: 5'- aCGucUCGGCGCUcGAgGCcGACUGCGg -3' miRNA: 3'- gGC--AGCUGCGGuCUgCGaCUGGCGCg -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 89710 | 0.66 | 0.892709 |
Target: 5'- ---aCGGCGCCGcGGUGCcGAuCCGCGCg -3' miRNA: 3'- ggcaGCUGCGGU-CUGCGaCU-GGCGCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 96118 | 0.66 | 0.892709 |
Target: 5'- aCGggGugGUC-GACGUUGACCGCc- -3' miRNA: 3'- gGCagCugCGGuCUGCGACUGGCGcg -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 126128 | 0.66 | 0.892709 |
Target: 5'- cUCGUCuGCGCCGGuuuCUGGCCG-GCc -3' miRNA: 3'- -GGCAGcUGCGGUCugcGACUGGCgCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 102475 | 0.66 | 0.897082 |
Target: 5'- gCGUCGGCguGCCGGccggcuuccACguccuguugcagcgGCUGGCgCGCGCg -3' miRNA: 3'- gGCAGCUG--CGGUC---------UG--------------CGACUG-GCGCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 111723 | 0.66 | 0.89522 |
Target: 5'- -gGUUGACGagCGGGCgaacgcgcucgucgaGCUGgcGCCGCGCg -3' miRNA: 3'- ggCAGCUGCg-GUCUG---------------CGAC--UGGCGCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 113864 | 0.66 | 0.898924 |
Target: 5'- -aGUUccgGCCAGGCGCgcucGGCCGCGg -3' miRNA: 3'- ggCAGcugCGGUCUGCGa---CUGGCGCg -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 186756 | 0.66 | 0.898924 |
Target: 5'- aCGUaccaggGGCagGCCAGGCGCUccGACacguaGCGCg -3' miRNA: 3'- gGCAg-----CUG--CGGUCUGCGA--CUGg----CGCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 117588 | 0.66 | 0.898924 |
Target: 5'- -aGUCGACGa-AGGC-CUGGCaCGCGUc -3' miRNA: 3'- ggCAGCUGCggUCUGcGACUG-GCGCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 182941 | 0.66 | 0.898924 |
Target: 5'- -aGUcCGGCGCCGGGCucgaGCcGACgGCGg -3' miRNA: 3'- ggCA-GCUGCGGUCUG----CGaCUGgCGCg -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 104287 | 0.66 | 0.898924 |
Target: 5'- gCCGaacaggaucUCGG-GCCGGGUGCacuugagguUGGCCGCGCa -3' miRNA: 3'- -GGC---------AGCUgCGGUCUGCG---------ACUGGCGCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 143459 | 0.66 | 0.898312 |
Target: 5'- cCCGcCGcGCGCgaugaacggcuggCAGAcgauguCGCUGGCCGCGg -3' miRNA: 3'- -GGCaGC-UGCG-------------GUCU------GCGACUGGCGCg -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 42724 | 0.66 | 0.898312 |
Target: 5'- gCGUCcACGuCCAagucuucGACcgaGCUGACCGCGa -3' miRNA: 3'- gGCAGcUGC-GGU-------CUG---CGACUGGCGCg -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 180290 | 0.66 | 0.892709 |
Target: 5'- cCCG-CGcCGCCGcaacACGCcGGCCgGCGCg -3' miRNA: 3'- -GGCaGCuGCGGUc---UGCGaCUGG-CGCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 195578 | 0.67 | 0.872847 |
Target: 5'- cCCGacCGAcCGCCGGAC-C-GGCCGaCGCg -3' miRNA: 3'- -GGCa-GCU-GCGGUCUGcGaCUGGC-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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