miRNA display CGI


Results 81 - 100 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 77929 0.67 0.865834
Target:  5'- uCCGcCGAaaccCGCCGGAgGC--GCCGCGa -3'
miRNA:   3'- -GGCaGCU----GCGGUCUgCGacUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 111635 0.67 0.865834
Target:  5'- gCCGcCGcCgGUCGGGCGCcgcGGCCGCGg -3'
miRNA:   3'- -GGCaGCuG-CGGUCUGCGa--CUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 134210 0.67 0.865834
Target:  5'- gCCGUCGGuCGCCAa--GC-GACCGC-Cg -3'
miRNA:   3'- -GGCAGCU-GCGGUcugCGaCUGGCGcG- -5'
10728 5' -58.5 NC_002794.1 + 134466 0.67 0.865834
Target:  5'- uUCGggaCGGCGCUcucGuCGCcaGACCGCGCg -3'
miRNA:   3'- -GGCa--GCUGCGGu--CuGCGa-CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 80456 0.67 0.858631
Target:  5'- cCCGUCGGCgGCC---CGCUGcccgucuuCCGCGUc -3'
miRNA:   3'- -GGCAGCUG-CGGucuGCGACu-------GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 130450 0.67 0.865834
Target:  5'- uCCGUguugGGCgGCgAGGCGCUGGCggcuugcgUGCGCg -3'
miRNA:   3'- -GGCAg---CUG-CGgUCUGCGACUG--------GCGCG- -5'
10728 5' -58.5 NC_002794.1 + 139464 0.67 0.861534
Target:  5'- gUCGUCGuGCGCCAgGACGgUGguguagaugggcgcgGgCGCGCu -3'
miRNA:   3'- -GGCAGC-UGCGGU-CUGCgAC---------------UgGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 19873 0.67 0.858631
Target:  5'- aCCGUcuacaccugCGugGCCGacCGCUG-CCGCGa -3'
miRNA:   3'- -GGCA---------GCugCGGUcuGCGACuGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 49505 0.67 0.858631
Target:  5'- gCCGUCGucgcuCGCCGGguacauggguucGCGC--GCCGCGa -3'
miRNA:   3'- -GGCAGCu----GCGGUC------------UGCGacUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 82570 0.67 0.865834
Target:  5'- gCCGgcgaggcCGACGCCgccgAGACGgaGACCcucucCGCg -3'
miRNA:   3'- -GGCa------GCUGCGG----UCUGCgaCUGGc----GCG- -5'
10728 5' -58.5 NC_002794.1 + 191779 0.67 0.865834
Target:  5'- uCCG-CGACGCUcGAacguuCGCUcGACCGCccGCu -3'
miRNA:   3'- -GGCaGCUGCGGuCU-----GCGA-CUGGCG--CG- -5'
10728 5' -58.5 NC_002794.1 + 85187 0.67 0.872847
Target:  5'- aCGccCGACGCCcGACGgggGACCcuGCGCc -3'
miRNA:   3'- gGCa-GCUGCGGuCUGCga-CUGG--CGCG- -5'
10728 5' -58.5 NC_002794.1 + 195578 0.67 0.872847
Target:  5'- cCCGacCGAcCGCCGGAC-C-GGCCGaCGCg -3'
miRNA:   3'- -GGCa-GCU-GCGGUCUGcGaCUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 68297 0.67 0.872847
Target:  5'- gCGUaCGaACGCCucGugGC-GGCCGaCGCg -3'
miRNA:   3'- gGCA-GC-UGCGGu-CugCGaCUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 63065 0.67 0.872847
Target:  5'- aCCG-CGGCgagcuccuggGCCGGcuguacuucagcGCGCUGccgcACCGCGCc -3'
miRNA:   3'- -GGCaGCUG----------CGGUC------------UGCGAC----UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 40299 0.67 0.872847
Target:  5'- uCCGUCG-CGCCgaggagGGACGgUuuuccucacccGCCGCGCg -3'
miRNA:   3'- -GGCAGCuGCGG------UCUGCgAc----------UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 20383 0.67 0.872847
Target:  5'- aUCGUCGACGCgGugcGGCGg-GACCGggaGCg -3'
miRNA:   3'- -GGCAGCUGCGgU---CUGCgaCUGGCg--CG- -5'
10728 5' -58.5 NC_002794.1 + 21873 0.67 0.872847
Target:  5'- uCCG-CGAgGCCGGcCGCgggGuguCCGCGg -3'
miRNA:   3'- -GGCaGCUgCGGUCuGCGa--Cu--GGCGCg -5'
10728 5' -58.5 NC_002794.1 + 67524 0.67 0.868662
Target:  5'- --cUCGACGaCCGGAUccgGCUugagcccuccgcccgGGCCGCGCc -3'
miRNA:   3'- ggcAGCUGC-GGUCUG---CGA---------------CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 63208 0.67 0.870763
Target:  5'- aCCGUCGAccugcgcgaccugcCGCCccuGCGCcu-CCGCGCc -3'
miRNA:   3'- -GGCAGCU--------------GCGGuc-UGCGacuGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.