Results 61 - 80 of 394 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10728 | 5' | -58.5 | NC_002794.1 | + | 122227 | 0.72 | 0.597618 |
Target: 5'- aCGauaagCGGCGCCGGACGCUG-CUGUcgaGCc -3' miRNA: 3'- gGCa----GCUGCGGUCUGCGACuGGCG---CG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 54661 | 0.72 | 0.607292 |
Target: 5'- gUGUCGAUguugacguacaGCCGGuacACGCUGAgCGCGUa -3' miRNA: 3'- gGCAGCUG-----------CGGUC---UGCGACUgGCGCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 110435 | 0.72 | 0.597618 |
Target: 5'- gCUGUCGuCGUCGGugGCggaGGCCG-GCg -3' miRNA: 3'- -GGCAGCuGCGGUCugCGa--CUGGCgCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 121396 | 0.71 | 0.616982 |
Target: 5'- aCCGcggcCGGCGCCGGGacCGC-GACCGuCGCc -3' miRNA: 3'- -GGCa---GCUGCGGUCU--GCGaCUGGC-GCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 85996 | 0.71 | 0.65578 |
Target: 5'- cCCGcCGACGguuccgaacCCGcuGGCGCcGACCGUGCg -3' miRNA: 3'- -GGCaGCUGC---------GGU--CUGCGaCUGGCGCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 53593 | 0.71 | 0.646088 |
Target: 5'- gUGUCGGCGUCGG-CGUcaccgGGCCGcCGCa -3' miRNA: 3'- gGCAGCUGCGGUCuGCGa----CUGGC-GCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 104429 | 0.71 | 0.636387 |
Target: 5'- gCCGcCGGC-CCGGACGCc-GCCGCGg -3' miRNA: 3'- -GGCaGCUGcGGUCUGCGacUGGCGCg -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 147046 | 0.71 | 0.635417 |
Target: 5'- gCCGUCGGCgGCCggucuaaGGACGgaG-CCGCGg -3' miRNA: 3'- -GGCAGCUG-CGG-------UCUGCgaCuGGCGCg -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 178406 | 0.71 | 0.665454 |
Target: 5'- aUCGUCGcuaaGCguGuCGCacgGACCGCGCg -3' miRNA: 3'- -GGCAGCug--CGguCuGCGa--CUGGCGCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 261 | 0.71 | 0.665454 |
Target: 5'- gCCGcCGcGCGCgCGGACGCgagGACgGCGg -3' miRNA: 3'- -GGCaGC-UGCG-GUCUGCGa--CUGgCGCg -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 193815 | 0.71 | 0.646088 |
Target: 5'- cUCGUCuGGCGCC-GACGCgucGCgGCGCc -3' miRNA: 3'- -GGCAG-CUGCGGuCUGCGac-UGgCGCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 14554 | 0.71 | 0.616982 |
Target: 5'- cCCGUCGACGCgCGGGaggcgaGCcGGCCGaccgaaGCg -3' miRNA: 3'- -GGCAGCUGCG-GUCUg-----CGaCUGGCg-----CG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 93749 | 0.71 | 0.65578 |
Target: 5'- aCCGugcucuUCGACGCCgaccucuugcGGACGCgcgugcUGGCgGCGCu -3' miRNA: 3'- -GGC------AGCUGCGG----------UCUGCG------ACUGgCGCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 101266 | 0.71 | 0.616982 |
Target: 5'- gCCGccccCGGCGCCGGugGC-GGCgGCGg -3' miRNA: 3'- -GGCa---GCUGCGGUCugCGaCUGgCGCg -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 131058 | 0.71 | 0.616982 |
Target: 5'- uUCGUCGACGaCgAGACGUUGuuCCGC-Ca -3' miRNA: 3'- -GGCAGCUGC-GgUCUGCGACu-GGCGcG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 187467 | 0.71 | 0.626683 |
Target: 5'- gCGUCGcucggcgcGCGCCGGGC-CgaggacgaGGCCGCGCa -3' miRNA: 3'- gGCAGC--------UGCGGUCUGcGa-------CUGGCGCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 84363 | 0.71 | 0.65578 |
Target: 5'- aCGUCGACGCC-GACaGCgGcACCGagaGCa -3' miRNA: 3'- gGCAGCUGCGGuCUG-CGaC-UGGCg--CG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 41287 | 0.71 | 0.636387 |
Target: 5'- aCGgCGGCGgCuccGACGCgGGCCGCGUg -3' miRNA: 3'- gGCaGCUGCgGu--CUGCGaCUGGCGCG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 58086 | 0.71 | 0.665454 |
Target: 5'- gCGgccCGGCGCCc-GCGCUcGACCGCuGCg -3' miRNA: 3'- gGCa--GCUGCGGucUGCGA-CUGGCG-CG- -5' |
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10728 | 5' | -58.5 | NC_002794.1 | + | 140905 | 0.71 | 0.665454 |
Target: 5'- aCCG-CGugGCgGGaccugcaggcGCGCUGcCUGCGCa -3' miRNA: 3'- -GGCaGCugCGgUC----------UGCGACuGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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