miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 152773 1.13 0.001536
Target:  5'- uCCGUCGACGCCAGACGCUGACCGCGCg -3'
miRNA:   3'- -GGCAGCUGCGGUCUGCGACUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 107296 0.81 0.211083
Target:  5'- gUCGUCGACGCUccucgcggGGGCGCcGuCCGCGCg -3'
miRNA:   3'- -GGCAGCUGCGG--------UCUGCGaCuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 120398 0.79 0.259061
Target:  5'- gUGUCGGCgGCCAccaaaacGACGUUGGCCGCGUu -3'
miRNA:   3'- gGCAGCUG-CGGU-------CUGCGACUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 82640 0.79 0.265574
Target:  5'- uCCGcCGGCGCCAGAaGC--GCCGCGCu -3'
miRNA:   3'- -GGCaGCUGCGGUCUgCGacUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 67217 0.79 0.265574
Target:  5'- gCGcUCGGCGCCGGGCgGCUaACCGCGUc -3'
miRNA:   3'- gGC-AGCUGCGGUCUG-CGAcUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 67414 0.79 0.271608
Target:  5'- gCGUCGGCGCCAG-CGUcGGCgGCGUg -3'
miRNA:   3'- gGCAGCUGCGGUCuGCGaCUGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 12929 0.78 0.281492
Target:  5'- gCCGUCGACGaCCuggcggacuucguGGCGUUGGCCGUGUc -3'
miRNA:   3'- -GGCAGCUGC-GGu------------CUGCGACUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 118267 0.78 0.29685
Target:  5'- gCCGgggcggCGGCGCCGG-CGUcgggGACCGCGCc -3'
miRNA:   3'- -GGCa-----GCUGCGGUCuGCGa---CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 100243 0.77 0.323876
Target:  5'- -gGUCGGCGUCAGccCGCUGACC-CGCu -3'
miRNA:   3'- ggCAGCUGCGGUCu-GCGACUGGcGCG- -5'
10728 5' -58.5 NC_002794.1 + 48031 0.76 0.360175
Target:  5'- gCGUC-ACGCCGGACGCcgaGugCGUGCu -3'
miRNA:   3'- gGCAGcUGCGGUCUGCGa--CugGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 48873 0.76 0.367767
Target:  5'- cCCGUCGGCgGCCAgGugGCaGGCCaGCGUu -3'
miRNA:   3'- -GGCAGCUG-CGGU-CugCGaCUGG-CGCG- -5'
10728 5' -58.5 NC_002794.1 + 151735 0.76 0.402457
Target:  5'- gUCGUCGGcCGCCGGucgccucgcGCGCUcguccucgagauggaGACCGCGCc -3'
miRNA:   3'- -GGCAGCU-GCGGUC---------UGCGA---------------CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 185519 0.75 0.414748
Target:  5'- gCGUCGGCGUCAuGACGCgccUcaucucgccacccGGCCGCGCg -3'
miRNA:   3'- gGCAGCUGCGGU-CUGCG---A-------------CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 105923 0.75 0.423907
Target:  5'- aCCGcCGcCGCCGGACggGCUGGaCGCGCu -3'
miRNA:   3'- -GGCaGCuGCGGUCUG--CGACUgGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 34714 0.75 0.432337
Target:  5'- cCCGcCGGCGCCacgAGGCGCgggcGGCCGCa- -3'
miRNA:   3'- -GGCaGCUGCGG---UCUGCGa---CUGGCGcg -5'
10728 5' -58.5 NC_002794.1 + 186843 0.75 0.432337
Target:  5'- cCCGaCaGCGCgCGGGCGCUG-CCGUGCa -3'
miRNA:   3'- -GGCaGcUGCG-GUCUGCGACuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 126274 0.75 0.432337
Target:  5'- gCUGgCGGCGCUGGGCuuGCUGugcGCCGCGCg -3'
miRNA:   3'- -GGCaGCUGCGGUCUG--CGAC---UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 47422 0.75 0.449486
Target:  5'- gCCGUCGcgcggaGCGCCAGGCGUuucagGACgGgGCa -3'
miRNA:   3'- -GGCAGC------UGCGGUCUGCGa----CUGgCgCG- -5'
10728 5' -58.5 NC_002794.1 + 58437 0.75 0.449486
Target:  5'- aCGcCGAgGCCAcgcuGCGcCUGGCCGCGCu -3'
miRNA:   3'- gGCaGCUgCGGUc---UGC-GACUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 112094 0.74 0.4582
Target:  5'- cCCGUUGcGCGuCCAGGCGCggccgggacGACgGCGCg -3'
miRNA:   3'- -GGCAGC-UGC-GGUCUGCGa--------CUGgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.