miRNA display CGI


Results 41 - 60 of 394 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 185929 0.73 0.549709
Target:  5'- aCCGcCGGCcacccGCCAGGCucGC-GGCCGCGCc -3'
miRNA:   3'- -GGCaGCUG-----CGGUCUG--CGaCUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 12217 0.72 0.559211
Target:  5'- gCCGgCGGCGUCGGcgGCGCcGGCgGCGCc -3'
miRNA:   3'- -GGCaGCUGCGGUC--UGCGaCUGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 106798 0.72 0.565889
Target:  5'- gCCGUCGGCGCaGGGCauuCUGACCaauugcgucguccgGCGCu -3'
miRNA:   3'- -GGCAGCUGCGgUCUGc--GACUGG--------------CGCG- -5'
10728 5' -58.5 NC_002794.1 + 14766 0.72 0.565889
Target:  5'- gCCGUCGAgGCCGcuGAgGCcggcgaggccggcgUGACCGCGa -3'
miRNA:   3'- -GGCAGCUgCGGU--CUgCG--------------ACUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 13697 0.72 0.568758
Target:  5'- uCCGUUG-CGaaggcuacaaCGGGCGCUcGACCGUGCg -3'
miRNA:   3'- -GGCAGCuGCg---------GUCUGCGA-CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 117622 0.72 0.568758
Target:  5'- gCCGagCGACa--GGGCGCcGACCGCGCg -3'
miRNA:   3'- -GGCa-GCUGcggUCUGCGaCUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 81999 0.72 0.568758
Target:  5'- cCCGUCGAcgaCGCCGGcCGCUGacGCCGaaacccgacgauCGCg -3'
miRNA:   3'- -GGCAGCU---GCGGUCuGCGAC--UGGC------------GCG- -5'
10728 5' -58.5 NC_002794.1 + 91107 0.72 0.578345
Target:  5'- gCUGU--ACGCCGGGCaGCUGguGCCGUGCg -3'
miRNA:   3'- -GGCAgcUGCGGUCUG-CGAC--UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 52084 0.72 0.578345
Target:  5'- gCG-CGGCGCaCAuGCuGCUGGCCGUGCu -3'
miRNA:   3'- gGCaGCUGCG-GUcUG-CGACUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 12173 0.72 0.578345
Target:  5'- aUCGUCGcCGCC-GACGCcgccgcGGCCGgGCg -3'
miRNA:   3'- -GGCAGCuGCGGuCUGCGa-----CUGGCgCG- -5'
10728 5' -58.5 NC_002794.1 + 61882 0.72 0.587967
Target:  5'- gUCGUCGGCGCC--GCGC-GGCgaGCGCg -3'
miRNA:   3'- -GGCAGCUGCGGucUGCGaCUGg-CGCG- -5'
10728 5' -58.5 NC_002794.1 + 36912 0.72 0.587967
Target:  5'- gUCG-CGGCGCCGGcccCGC-GACCGCGg -3'
miRNA:   3'- -GGCaGCUGCGGUCu--GCGaCUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 148121 0.72 0.597618
Target:  5'- aCgGUCGGUGUCGGGCGCggGGCCGCcgggGCg -3'
miRNA:   3'- -GgCAGCUGCGGUCUGCGa-CUGGCG----CG- -5'
10728 5' -58.5 NC_002794.1 + 122227 0.72 0.597618
Target:  5'- aCGauaagCGGCGCCGGACGCUG-CUGUcgaGCc -3'
miRNA:   3'- gGCa----GCUGCGGUCUGCGACuGGCG---CG- -5'
10728 5' -58.5 NC_002794.1 + 110435 0.72 0.597618
Target:  5'- gCUGUCGuCGUCGGugGCggaGGCCG-GCg -3'
miRNA:   3'- -GGCAGCuGCGGUCugCGa--CUGGCgCG- -5'
10728 5' -58.5 NC_002794.1 + 66851 0.72 0.597618
Target:  5'- gCCGUCGGCGC--GGCGa-GGCCGCGg -3'
miRNA:   3'- -GGCAGCUGCGguCUGCgaCUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 89916 0.72 0.607292
Target:  5'- cCCGUUGGCGCUAGAgGCgcggGcGCCG-GCu -3'
miRNA:   3'- -GGCAGCUGCGGUCUgCGa---C-UGGCgCG- -5'
10728 5' -58.5 NC_002794.1 + 54661 0.72 0.607292
Target:  5'- gUGUCGAUguugacguacaGCCGGuacACGCUGAgCGCGUa -3'
miRNA:   3'- gGCAGCUG-----------CGGUC---UGCGACUgGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 151038 0.72 0.607292
Target:  5'- cCCGUCuGAUGaCGGGCGagugcacGGCCGCGCa -3'
miRNA:   3'- -GGCAG-CUGCgGUCUGCga-----CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 130107 0.72 0.607292
Target:  5'- uUCGUCGAgagcgccucCGCCuugcgagauauuAGACGCUGcGCgGCGCg -3'
miRNA:   3'- -GGCAGCU---------GCGG------------UCUGCGAC-UGgCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.