miRNA display CGI


Results 61 - 80 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 150716 0.72 0.607292
Target:  5'- aUCGacuUCGACGUgcGGCgGCUGACCGCGUu -3'
miRNA:   3'- -GGC---AGCUGCGguCUG-CGACUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 151038 0.72 0.607292
Target:  5'- cCCGUCuGAUGaCGGGCGagugcacGGCCGCGCa -3'
miRNA:   3'- -GGCAG-CUGCgGUCUGCga-----CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 54661 0.72 0.607292
Target:  5'- gUGUCGAUguugacguacaGCCGGuacACGCUGAgCGCGUa -3'
miRNA:   3'- gGCAGCUG-----------CGGUC---UGCGACUgGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 101266 0.71 0.616982
Target:  5'- gCCGccccCGGCGCCGGugGC-GGCgGCGg -3'
miRNA:   3'- -GGCa---GCUGCGGUCugCGaCUGgCGCg -5'
10728 5' -58.5 NC_002794.1 + 121396 0.71 0.616982
Target:  5'- aCCGcggcCGGCGCCGGGacCGC-GACCGuCGCc -3'
miRNA:   3'- -GGCa---GCUGCGGUCU--GCGaCUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 102753 0.71 0.616982
Target:  5'- gCCGagGAC-CCGGACuacgUGGCCGCGCa -3'
miRNA:   3'- -GGCagCUGcGGUCUGcg--ACUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 131058 0.71 0.616982
Target:  5'- uUCGUCGACGaCgAGACGUUGuuCCGC-Ca -3'
miRNA:   3'- -GGCAGCUGC-GgUCUGCGACu-GGCGcG- -5'
10728 5' -58.5 NC_002794.1 + 14554 0.71 0.616982
Target:  5'- cCCGUCGACGCgCGGGaggcgaGCcGGCCGaccgaaGCg -3'
miRNA:   3'- -GGCAGCUGCG-GUCUg-----CGaCUGGCg-----CG- -5'
10728 5' -58.5 NC_002794.1 + 187467 0.71 0.626683
Target:  5'- gCGUCGcucggcgcGCGCCGGGC-CgaggacgaGGCCGCGCa -3'
miRNA:   3'- gGCAGC--------UGCGGUCUGcGa-------CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 147046 0.71 0.635417
Target:  5'- gCCGUCGGCgGCCggucuaaGGACGgaG-CCGCGg -3'
miRNA:   3'- -GGCAGCUG-CGG-------UCUGCgaCuGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 104429 0.71 0.636387
Target:  5'- gCCGcCGGC-CCGGACGCc-GCCGCGg -3'
miRNA:   3'- -GGCaGCUGcGGUCUGCGacUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 41287 0.71 0.636387
Target:  5'- aCGgCGGCGgCuccGACGCgGGCCGCGUg -3'
miRNA:   3'- gGCaGCUGCgGu--CUGCGaCUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 138884 0.71 0.643179
Target:  5'- gUCGUCGcucuCGCCuucuucacucgaucAGGUGCUGACCGCGg -3'
miRNA:   3'- -GGCAGCu---GCGG--------------UCUGCGACUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 53593 0.71 0.646088
Target:  5'- gUGUCGGCGUCGG-CGUcaccgGGCCGcCGCa -3'
miRNA:   3'- gGCAGCUGCGGUCuGCGa----CUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 193815 0.71 0.646088
Target:  5'- cUCGUCuGGCGCC-GACGCgucGCgGCGCc -3'
miRNA:   3'- -GGCAG-CUGCGGuCUGCGac-UGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 93749 0.71 0.65578
Target:  5'- aCCGugcucuUCGACGCCgaccucuugcGGACGCgcgugcUGGCgGCGCu -3'
miRNA:   3'- -GGC------AGCUGCGG----------UCUGCG------ACUGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 84363 0.71 0.65578
Target:  5'- aCGUCGACGCC-GACaGCgGcACCGagaGCa -3'
miRNA:   3'- gGCAGCUGCGGuCUG-CGaC-UGGCg--CG- -5'
10728 5' -58.5 NC_002794.1 + 85996 0.71 0.65578
Target:  5'- cCCGcCGACGguuccgaacCCGcuGGCGCcGACCGUGCg -3'
miRNA:   3'- -GGCaGCUGC---------GGU--CUGCGaCUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 12583 0.71 0.664488
Target:  5'- cCCGuUCGGCGCCuGcguccccACGCUGcgccACCaGCGCg -3'
miRNA:   3'- -GGC-AGCUGCGGuC-------UGCGAC----UGG-CGCG- -5'
10728 5' -58.5 NC_002794.1 + 58086 0.71 0.665454
Target:  5'- gCGgccCGGCGCCc-GCGCUcGACCGCuGCg -3'
miRNA:   3'- gGCa--GCUGCGGucUGCGA-CUGGCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.