miRNA display CGI


Results 81 - 100 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 140905 0.71 0.665454
Target:  5'- aCCG-CGugGCgGGaccugcaggcGCGCUGcCUGCGCa -3'
miRNA:   3'- -GGCaGCugCGgUC----------UGCGACuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 58086 0.71 0.665454
Target:  5'- gCGgccCGGCGCCc-GCGCUcGACCGCuGCg -3'
miRNA:   3'- gGCa--GCUGCGGucUGCGA-CUGGCG-CG- -5'
10728 5' -58.5 NC_002794.1 + 178406 0.71 0.665454
Target:  5'- aUCGUCGcuaaGCguGuCGCacgGACCGCGCg -3'
miRNA:   3'- -GGCAGCug--CGguCuGCGa--CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 19306 0.7 0.675104
Target:  5'- gCGUCGcugaccgcccACGCC--GCGCUGGcgacCCGCGCg -3'
miRNA:   3'- gGCAGC----------UGCGGucUGCGACU----GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 189862 0.7 0.675104
Target:  5'- gCCGUCGGCGUCGucGcCGCcGACCGgccCGCu -3'
miRNA:   3'- -GGCAGCUGCGGU--CuGCGaCUGGC---GCG- -5'
10728 5' -58.5 NC_002794.1 + 82698 0.7 0.684723
Target:  5'- cCCGgCG-CGCCgAGACGCgccgagGacGCCGCGCc -3'
miRNA:   3'- -GGCaGCuGCGG-UCUGCGa-----C--UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 92268 0.7 0.684723
Target:  5'- gCGgCGGCGCCGGGCGa-GG-CGCGCa -3'
miRNA:   3'- gGCaGCUGCGGUCUGCgaCUgGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 52914 0.7 0.684723
Target:  5'- gCCGUCGcCGCCGccGuCGCUcGGCCG-GCa -3'
miRNA:   3'- -GGCAGCuGCGGU--CuGCGA-CUGGCgCG- -5'
10728 5' -58.5 NC_002794.1 + 126378 0.7 0.684723
Target:  5'- gCGUgGGCGCCGGggccuGCGCggcGGCgUGCGCg -3'
miRNA:   3'- gGCAgCUGCGGUC-----UGCGa--CUG-GCGCG- -5'
10728 5' -58.5 NC_002794.1 + 124473 0.7 0.684723
Target:  5'- gCGUCGcCGCCGcACGCccgGACCGC-Cg -3'
miRNA:   3'- gGCAGCuGCGGUcUGCGa--CUGGCGcG- -5'
10728 5' -58.5 NC_002794.1 + 80415 0.7 0.684723
Target:  5'- cCCaggUGGCGCCGGGCGg-GGCCGcCGCc -3'
miRNA:   3'- -GGca-GCUGCGGUCUGCgaCUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 72927 0.7 0.684723
Target:  5'- gCCGUCGGaGCCGG-CGU---CCGCGCg -3'
miRNA:   3'- -GGCAGCUgCGGUCuGCGacuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 15267 0.7 0.684723
Target:  5'- aCCGUCGGCgaGCCGcGCgGCUcccuCCGCGCg -3'
miRNA:   3'- -GGCAGCUG--CGGUcUG-CGAcu--GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 33454 0.7 0.684723
Target:  5'- cUCGggCGGcCGCCGGACGCgcccacGCCGCuGCa -3'
miRNA:   3'- -GGCa-GCU-GCGGUCUGCGac----UGGCG-CG- -5'
10728 5' -58.5 NC_002794.1 + 44185 0.7 0.684723
Target:  5'- cUCGUCGACuCCGGGCGaagccgGGCCGaCGUc -3'
miRNA:   3'- -GGCAGCUGcGGUCUGCga----CUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 92718 0.7 0.684723
Target:  5'- gUGUCGA-GCCuGucGCGCUGGCUGCuGCa -3'
miRNA:   3'- gGCAGCUgCGGuC--UGCGACUGGCG-CG- -5'
10728 5' -58.5 NC_002794.1 + 70059 0.7 0.68856
Target:  5'- cCCgGUCgGGCgGCCGcagccgcagcaaggcGACGCaGGCCGCGCa -3'
miRNA:   3'- -GG-CAG-CUG-CGGU---------------CUGCGaCUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 81538 0.7 0.691433
Target:  5'- gCGcUCGAgCGCUGGACgGCUGccgccgccgccgccGCCGCGCc -3'
miRNA:   3'- gGC-AGCU-GCGGUCUG-CGAC--------------UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 190114 0.7 0.694303
Target:  5'- gCCGUCcGCGCC-GAaGCgGuCCGCGCg -3'
miRNA:   3'- -GGCAGcUGCGGuCUgCGaCuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 22629 0.7 0.694303
Target:  5'- gCCGcUCGagGCGCuCGGAcCGCUGAUCGUGa -3'
miRNA:   3'- -GGC-AGC--UGCG-GUCU-GCGACUGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.