miRNA display CGI


Results 21 - 40 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 127339 0.66 0.898924
Target:  5'- gCGcCGcUGCCgAGACGCUcgcggcGGCgGCGCg -3'
miRNA:   3'- gGCaGCuGCGG-UCUGCGA------CUGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 82930 0.66 0.898924
Target:  5'- gCCGUCGcCGCUccGACuccagGCccGCCGCGCa -3'
miRNA:   3'- -GGCAGCuGCGGu-CUG-----CGacUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 106066 0.66 0.898924
Target:  5'- aCGUgGGcCGCCGGcACGCggcuuuuCUGCGCu -3'
miRNA:   3'- gGCAgCU-GCGGUC-UGCGacu----GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 107390 0.66 0.898924
Target:  5'- gCCGUCGG-GCU-GGCGCUGAUCcucgGCGg -3'
miRNA:   3'- -GGCAGCUgCGGuCUGCGACUGG----CGCg -5'
10728 5' -58.5 NC_002794.1 + 34329 0.66 0.898924
Target:  5'- gCCGUC--CGCaAGGCGaC-GGCCGCGCc -3'
miRNA:   3'- -GGCAGcuGCGgUCUGC-GaCUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 34246 0.66 0.898924
Target:  5'- aCGcgCGGCuGCC-GcCGCaggcgGACCGCGCg -3'
miRNA:   3'- gGCa-GCUG-CGGuCuGCGa----CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 149658 0.66 0.898924
Target:  5'- gCCGagGAgGCCgagcggGGGCGCgucgcgcucgacUGGCCGCGg -3'
miRNA:   3'- -GGCagCUgCGG------UCUGCG------------ACUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 143459 0.66 0.898312
Target:  5'- cCCGcCGcGCGCgaugaacggcuggCAGAcgauguCGCUGGCCGCGg -3'
miRNA:   3'- -GGCaGC-UGCG-------------GUCU------GCGACUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 42724 0.66 0.898312
Target:  5'- gCGUCcACGuCCAagucuucGACcgaGCUGACCGCGa -3'
miRNA:   3'- gGCAGcUGC-GGU-------CUG---CGACUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 102475 0.66 0.897082
Target:  5'- gCGUCGGCguGCCGGccggcuuccACguccuguugcagcgGCUGGCgCGCGCg -3'
miRNA:   3'- gGCAGCUG--CGGUC---------UG--------------CGACUG-GCGCG- -5'
10728 5' -58.5 NC_002794.1 + 111723 0.66 0.89522
Target:  5'- -gGUUGACGagCGGGCgaacgcgcucgucgaGCUGgcGCCGCGCg -3'
miRNA:   3'- ggCAGCUGCg-GUCUG---------------CGAC--UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 89710 0.66 0.892709
Target:  5'- ---aCGGCGCCGcGGUGCcGAuCCGCGCg -3'
miRNA:   3'- ggcaGCUGCGGU-CUGCGaCU-GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 96118 0.66 0.892709
Target:  5'- aCGggGugGUC-GACGUUGACCGCc- -3'
miRNA:   3'- gGCagCugCGGuCUGCGACUGGCGcg -5'
10728 5' -58.5 NC_002794.1 + 126128 0.66 0.892709
Target:  5'- cUCGUCuGCGCCGGuuuCUGGCCG-GCc -3'
miRNA:   3'- -GGCAGcUGCGGUCugcGACUGGCgCG- -5'
10728 5' -58.5 NC_002794.1 + 146684 0.66 0.892709
Target:  5'- aCGucUCGGCGCUcGAgGCcGACUGCGg -3'
miRNA:   3'- gGC--AGCUGCGGuCUgCGaCUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 121800 0.66 0.892709
Target:  5'- aCCG-CGACcgGCCGG-CGCcuGCCGCuGCa -3'
miRNA:   3'- -GGCaGCUG--CGGUCuGCGacUGGCG-CG- -5'
10728 5' -58.5 NC_002794.1 + 120103 0.66 0.892709
Target:  5'- nCCGagCG-CGCC--GCGCgUGACgCGCGCg -3'
miRNA:   3'- -GGCa-GCuGCGGucUGCG-ACUG-GCGCG- -5'
10728 5' -58.5 NC_002794.1 + 194529 0.66 0.892709
Target:  5'- gCCGgcccagcagCGcCGCCAGcACGC---CCGCGCg -3'
miRNA:   3'- -GGCa--------GCuGCGGUC-UGCGacuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 81319 0.66 0.892709
Target:  5'- cCCGUCGGCcaaGCCgcGGuACGCUccGCCGuCGCc -3'
miRNA:   3'- -GGCAGCUG---CGG--UC-UGCGAc-UGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 152228 0.66 0.892709
Target:  5'- aCGUCGcGCGCCAcgucGCGCgcACCGuCGCc -3'
miRNA:   3'- gGCAGC-UGCGGUc---UGCGacUGGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.