miRNA display CGI


Results 41 - 60 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 126128 0.66 0.892709
Target:  5'- cUCGUCuGCGCCGGuuuCUGGCCG-GCc -3'
miRNA:   3'- -GGCAGcUGCGGUCugcGACUGGCgCG- -5'
10728 5' -58.5 NC_002794.1 + 81319 0.66 0.892709
Target:  5'- cCCGUCGGCcaaGCCgcGGuACGCUccGCCGuCGCc -3'
miRNA:   3'- -GGCAGCUG---CGG--UC-UGCGAc-UGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 194529 0.66 0.892709
Target:  5'- gCCGgcccagcagCGcCGCCAGcACGC---CCGCGCg -3'
miRNA:   3'- -GGCa--------GCuGCGGUC-UGCGacuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 120103 0.66 0.892709
Target:  5'- nCCGagCG-CGCC--GCGCgUGACgCGCGCg -3'
miRNA:   3'- -GGCa-GCuGCGGucUGCG-ACUG-GCGCG- -5'
10728 5' -58.5 NC_002794.1 + 121800 0.66 0.892709
Target:  5'- aCCG-CGACcgGCCGG-CGCcuGCCGCuGCa -3'
miRNA:   3'- -GGCaGCUG--CGGUCuGCGacUGGCG-CG- -5'
10728 5' -58.5 NC_002794.1 + 146684 0.66 0.892709
Target:  5'- aCGucUCGGCGCUcGAgGCcGACUGCGg -3'
miRNA:   3'- gGC--AGCUGCGGuCUgCGaCUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 89710 0.66 0.892709
Target:  5'- ---aCGGCGCCGcGGUGCcGAuCCGCGCg -3'
miRNA:   3'- ggcaGCUGCGGU-CUGCGaCU-GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 96118 0.66 0.892709
Target:  5'- aCGggGugGUC-GACGUUGACCGCc- -3'
miRNA:   3'- gGCagCugCGGuCUGCGACUGGCGcg -5'
10728 5' -58.5 NC_002794.1 + 46613 0.66 0.892077
Target:  5'- gCCGUCcGCGCCGGgcuggacgagaucACGUUccGcCCGUGCa -3'
miRNA:   3'- -GGCAGcUGCGGUC-------------UGCGA--CuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 115330 0.66 0.890805
Target:  5'- gCCG-CGGCGuCCGGGcCGCUcggcacguccaggcGACagaGCGCg -3'
miRNA:   3'- -GGCaGCUGC-GGUCU-GCGA--------------CUGg--CGCG- -5'
10728 5' -58.5 NC_002794.1 + 135535 0.66 0.890805
Target:  5'- gCCGcUCGGuCGCCgaccgaccgaauagGGGCGCaGGCCG-GCg -3'
miRNA:   3'- -GGC-AGCU-GCGG--------------UCUGCGaCUGGCgCG- -5'
10728 5' -58.5 NC_002794.1 + 129021 0.66 0.88629
Target:  5'- aCCGUCGcCGCCGucucGGCGaaCUGuCUGCGg -3'
miRNA:   3'- -GGCAGCuGCGGU----CUGC--GACuGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 80519 0.66 0.88629
Target:  5'- gCCG-CGGCGCgC-GACGcCUGGCaccgGCGCc -3'
miRNA:   3'- -GGCaGCUGCG-GuCUGC-GACUGg---CGCG- -5'
10728 5' -58.5 NC_002794.1 + 60782 0.66 0.88629
Target:  5'- gCCGUCGAacggacgGCuCGGACcaUGACgGCGCc -3'
miRNA:   3'- -GGCAGCUg------CG-GUCUGcgACUGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 144056 0.66 0.88629
Target:  5'- gCCGUCGAcuucuCGCCcGACGCgu-CCGaCGa -3'
miRNA:   3'- -GGCAGCU-----GCGGuCUGCGacuGGC-GCg -5'
10728 5' -58.5 NC_002794.1 + 144408 0.66 0.88629
Target:  5'- gCGUCG-CGCUGGGCccgagcgcccuGCUGcgccgagugcaGCCGUGCg -3'
miRNA:   3'- gGCAGCuGCGGUCUG-----------CGAC-----------UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 194027 0.66 0.88629
Target:  5'- gCCGcCGGCGCCu--CGCccGCCGcCGCc -3'
miRNA:   3'- -GGCaGCUGCGGucuGCGacUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 190182 0.66 0.88629
Target:  5'- cCCGcCG-CGCCAccuccacGCGCUccagcGCCGCGCg -3'
miRNA:   3'- -GGCaGCuGCGGUc------UGCGAc----UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 185173 0.66 0.88629
Target:  5'- gCCGgcgCGGCGCgGucGGCGCgGuCgGCGCg -3'
miRNA:   3'- -GGCa--GCUGCGgU--CUGCGaCuGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 59652 0.66 0.88629
Target:  5'- cCCGgu--CGCCAcGGCGCUGcagaGCCGCcuGCg -3'
miRNA:   3'- -GGCagcuGCGGU-CUGCGAC----UGGCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.