miRNA display CGI


Results 61 - 80 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 80519 0.66 0.88629
Target:  5'- gCCG-CGGCGCgC-GACGcCUGGCaccgGCGCc -3'
miRNA:   3'- -GGCaGCUGCG-GuCUGC-GACUGg---CGCG- -5'
10728 5' -58.5 NC_002794.1 + 28668 0.66 0.88629
Target:  5'- cCCGgaacCGcCGCCGGugGCcGucGCCGcCGCc -3'
miRNA:   3'- -GGCa---GCuGCGGUCugCGaC--UGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 185173 0.66 0.88629
Target:  5'- gCCGgcgCGGCGCgGucGGCGCgGuCgGCGCg -3'
miRNA:   3'- -GGCa--GCUGCGgU--CUGCGaCuGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 190182 0.66 0.88629
Target:  5'- cCCGcCG-CGCCAccuccacGCGCUccagcGCCGCGCg -3'
miRNA:   3'- -GGCaGCuGCGGUc------UGCGAc----UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 194027 0.66 0.88629
Target:  5'- gCCGcCGGCGCCu--CGCccGCCGcCGCc -3'
miRNA:   3'- -GGCaGCUGCGGucuGCGacUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 144408 0.66 0.88629
Target:  5'- gCGUCG-CGCUGGGCccgagcgcccuGCUGcgccgagugcaGCCGUGCg -3'
miRNA:   3'- gGCAGCuGCGGUCUG-----------CGAC-----------UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 144056 0.66 0.88629
Target:  5'- gCCGUCGAcuucuCGCCcGACGCgu-CCGaCGa -3'
miRNA:   3'- -GGCAGCU-----GCGGuCUGCGacuGGC-GCg -5'
10728 5' -58.5 NC_002794.1 + 60782 0.66 0.88629
Target:  5'- gCCGUCGAacggacgGCuCGGACcaUGACgGCGCc -3'
miRNA:   3'- -GGCAGCUg------CG-GUCUGcgACUGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 185421 0.66 0.885636
Target:  5'- gCCGUCGacucgacgcgGCGCCAuGCGCgGAcaggucuCCGCGa -3'
miRNA:   3'- -GGCAGC----------UGCGGUcUGCGaCU-------GGCGCg -5'
10728 5' -58.5 NC_002794.1 + 9120 0.66 0.879668
Target:  5'- -aGU-GAgGCCGGGCGacgaACCGCGCg -3'
miRNA:   3'- ggCAgCUgCGGUCUGCgac-UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 158429 0.66 0.879668
Target:  5'- aCGaaCGcACGCCAGGCGgguuCCGCGCu -3'
miRNA:   3'- gGCa-GC-UGCGGUCUGCgacuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 121471 0.66 0.879668
Target:  5'- aCCGUCGAgacgacCGCCgguucGGACGC-GGCCucCGCc -3'
miRNA:   3'- -GGCAGCU------GCGG-----UCUGCGaCUGGc-GCG- -5'
10728 5' -58.5 NC_002794.1 + 77004 0.66 0.879668
Target:  5'- aCCGUCaccggGAUGCCGccGGCGCaccucGACCGCu- -3'
miRNA:   3'- -GGCAG-----CUGCGGU--CUGCGa----CUGGCGcg -5'
10728 5' -58.5 NC_002794.1 + 38706 0.66 0.879668
Target:  5'- gCCGUCGAgCGCCccGGcCGCcgaaaugggGACCuCGCa -3'
miRNA:   3'- -GGCAGCU-GCGG--UCuGCGa--------CUGGcGCG- -5'
10728 5' -58.5 NC_002794.1 + 125829 0.66 0.879668
Target:  5'- uCC-UCGGCGCCc--UGCUG-CUGCGCu -3'
miRNA:   3'- -GGcAGCUGCGGucuGCGACuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 182035 0.66 0.879668
Target:  5'- gCCGcCGGCGaCCAGACcagGucCUGCGCg -3'
miRNA:   3'- -GGCaGCUGC-GGUCUGcgaCu-GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 180849 0.66 0.879668
Target:  5'- aCCGUCGucuacggccuCGUCGGAgGCggcgGAuCCgGCGCg -3'
miRNA:   3'- -GGCAGCu---------GCGGUCUgCGa---CU-GG-CGCG- -5'
10728 5' -58.5 NC_002794.1 + 153287 0.66 0.879668
Target:  5'- cCCGUCG-C-CCgAGACGCaGGCCGgGg -3'
miRNA:   3'- -GGCAGCuGcGG-UCUGCGaCUGGCgCg -5'
10728 5' -58.5 NC_002794.1 + 83768 0.66 0.879668
Target:  5'- cCCGUaCGACGac-GACGCcGccGCCGCGUc -3'
miRNA:   3'- -GGCA-GCUGCgguCUGCGaC--UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 195578 0.67 0.872847
Target:  5'- cCCGacCGAcCGCCGGAC-C-GGCCGaCGCg -3'
miRNA:   3'- -GGCa-GCU-GCGGUCUGcGaCUGGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.