miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 1 0.67 0.843678
Target:  5'- ----CGAgCGCCgAGACGC-GGCCGCGa -3'
miRNA:   3'- ggcaGCU-GCGG-UCUGCGaCUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 261 0.71 0.665454
Target:  5'- gCCGcCGcGCGCgCGGACGCgagGACgGCGg -3'
miRNA:   3'- -GGCaGC-UGCG-GUCUGCGa--CUGgCGCg -5'
10728 5' -58.5 NC_002794.1 + 347 0.7 0.702884
Target:  5'- cCCGcgCGACGgCAGAUuuucacgGCaaacGGCCGCGCg -3'
miRNA:   3'- -GGCa-GCUGCgGUCUG-------CGa---CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 9120 0.66 0.879668
Target:  5'- -aGU-GAgGCCGGGCGacgaACCGCGCg -3'
miRNA:   3'- ggCAgCUgCGGUCUGCgac-UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 10334 0.68 0.827235
Target:  5'- gUCGUCGGCGCCgcgaccgggugacGGACuGCUcGACgGUGg -3'
miRNA:   3'- -GGCAGCUGCGG-------------UCUG-CGA-CUGgCGCg -5'
10728 5' -58.5 NC_002794.1 + 11094 0.73 0.518737
Target:  5'- gUCGUCGGCGCCAccuuccugcucuacGGCGU--GCUGCGCc -3'
miRNA:   3'- -GGCAGCUGCGGU--------------CUGCGacUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 12023 0.69 0.777483
Target:  5'- gCCGcCGGC-CCGGGCGU---CCGCGCc -3'
miRNA:   3'- -GGCaGCUGcGGUCUGCGacuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 12173 0.72 0.578345
Target:  5'- aUCGUCGcCGCC-GACGCcgccgcGGCCGgGCg -3'
miRNA:   3'- -GGCAGCuGCGGuCUGCGa-----CUGGCgCG- -5'
10728 5' -58.5 NC_002794.1 + 12217 0.72 0.559211
Target:  5'- gCCGgCGGCGUCGGcgGCGCcGGCgGCGCc -3'
miRNA:   3'- -GGCaGCUGCGGUC--UGCGaCUGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 12248 0.66 0.88629
Target:  5'- uCCG-CGGCGCCgauccggaacgAGACGUcuccggGuuuCCGCGCc -3'
miRNA:   3'- -GGCaGCUGCGG-----------UCUGCGa-----Cu--GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 12583 0.71 0.664488
Target:  5'- cCCGuUCGGCGCCuGcguccccACGCUGcgccACCaGCGCg -3'
miRNA:   3'- -GGC-AGCUGCGGuC-------UGCGAC----UGG-CGCG- -5'
10728 5' -58.5 NC_002794.1 + 12877 0.67 0.858631
Target:  5'- cCCGcagcCGAUGCCGGAccacgaccCGCUcGACUGgGCc -3'
miRNA:   3'- -GGCa---GCUGCGGUCU--------GCGA-CUGGCgCG- -5'
10728 5' -58.5 NC_002794.1 + 12929 0.78 0.281492
Target:  5'- gCCGUCGACGaCCuggcggacuucguGGCGUUGGCCGUGUc -3'
miRNA:   3'- -GGCAGCUGC-GGu------------CUGCGACUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 13697 0.72 0.568758
Target:  5'- uCCGUUG-CGaaggcuacaaCGGGCGCUcGACCGUGCg -3'
miRNA:   3'- -GGCAGCuGCg---------GUCUGCGA-CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 14229 0.68 0.828034
Target:  5'- cCCGcCGACGaCagaggAGACGgaGACCGCcgGCu -3'
miRNA:   3'- -GGCaGCUGC-Gg----UCUGCgaCUGGCG--CG- -5'
10728 5' -58.5 NC_002794.1 + 14554 0.71 0.616982
Target:  5'- cCCGUCGACGCgCGGGaggcgaGCcGGCCGaccgaaGCg -3'
miRNA:   3'- -GGCAGCUGCG-GUCUg-----CGaCUGGCg-----CG- -5'
10728 5' -58.5 NC_002794.1 + 14615 0.66 0.904931
Target:  5'- aCCG-CGACgggGCCggAGACGg-GGCCGgGCa -3'
miRNA:   3'- -GGCaGCUG---CGG--UCUGCgaCUGGCgCG- -5'
10728 5' -58.5 NC_002794.1 + 14766 0.72 0.565889
Target:  5'- gCCGUCGAgGCCGcuGAgGCcggcgaggccggcgUGACCGCGa -3'
miRNA:   3'- -GGCAGCUgCGGU--CUgCG--------------ACUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 15267 0.7 0.684723
Target:  5'- aCCGUCGGCgaGCCGcGCgGCUcccuCCGCGCg -3'
miRNA:   3'- -GGCAGCUG--CGGUcUG-CGAcu--GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 15336 0.68 0.786244
Target:  5'- uCCGgacggCGugGCCAGAuggaaucgcaCGCUcucGACCGCcuGCc -3'
miRNA:   3'- -GGCa----GCugCGGUCU----------GCGA---CUGGCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.