miRNA display CGI


Results 21 - 40 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 16353 0.73 0.540257
Target:  5'- aCGUCGGCGCCAccCGCac-CCGCGUg -3'
miRNA:   3'- gGCAGCUGCGGUcuGCGacuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 16406 0.65 0.90901
Target:  5'- gUCGUCGACucuuggcguuaccgGaCCcGACGCcGAguCCGCGCu -3'
miRNA:   3'- -GGCAGCUG--------------C-GGuCUGCGaCU--GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 16802 0.68 0.828034
Target:  5'- gCCGaCGACGcCCAGcCGCccccGCCGcCGCa -3'
miRNA:   3'- -GGCaGCUGC-GGUCuGCGac--UGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 16931 0.68 0.828034
Target:  5'- gUCGUCGGCGCCgAGcCGCc-ACCGCc- -3'
miRNA:   3'- -GGCAGCUGCGG-UCuGCGacUGGCGcg -5'
10728 5' -58.5 NC_002794.1 + 17434 0.67 0.858631
Target:  5'- uCCG-CGcCGCCGG-CGCUcgGGCC-CGCg -3'
miRNA:   3'- -GGCaGCuGCGGUCuGCGA--CUGGcGCG- -5'
10728 5' -58.5 NC_002794.1 + 17499 0.67 0.851243
Target:  5'- aUCGcCGACGCCGGcCGa-GAUCgGCGCc -3'
miRNA:   3'- -GGCaGCUGCGGUCuGCgaCUGG-CGCG- -5'
10728 5' -58.5 NC_002794.1 + 18858 0.66 0.88629
Target:  5'- gCCGUCGccgaucgccaACGCCAccGACGCcGGCgcggaGCGUc -3'
miRNA:   3'- -GGCAGC----------UGCGGU--CUGCGaCUGg----CGCG- -5'
10728 5' -58.5 NC_002794.1 + 19306 0.7 0.675104
Target:  5'- gCGUCGcugaccgcccACGCC--GCGCUGGcgacCCGCGCg -3'
miRNA:   3'- gGCAGC----------UGCGGucUGCGACU----GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 19784 0.66 0.898924
Target:  5'- uCCGggugcuccUGACGCUGcucCGCUcgGACCGCGCg -3'
miRNA:   3'- -GGCa-------GCUGCGGUcu-GCGA--CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 19873 0.67 0.858631
Target:  5'- aCCGUcuacaccugCGugGCCGacCGCUG-CCGCGa -3'
miRNA:   3'- -GGCA---------GCugCGGUcuGCGACuGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 20383 0.67 0.872847
Target:  5'- aUCGUCGACGCgGugcGGCGg-GACCGggaGCg -3'
miRNA:   3'- -GGCAGCUGCGgU---CUGCgaCUGGCg--CG- -5'
10728 5' -58.5 NC_002794.1 + 21700 0.67 0.8579
Target:  5'- cCCGccUCGGCGUCcacGGGCGCUgcgucgcGAUCGCGa -3'
miRNA:   3'- -GGC--AGCUGCGG---UCUGCGA-------CUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 21873 0.67 0.872847
Target:  5'- uCCG-CGAgGCCGGcCGCgggGuguCCGCGg -3'
miRNA:   3'- -GGCaGCUgCGGUCuGCGa--Cu--GGCGCg -5'
10728 5' -58.5 NC_002794.1 + 22629 0.7 0.694303
Target:  5'- gCCGcUCGagGCGCuCGGAcCGCUGAUCGUGa -3'
miRNA:   3'- -GGC-AGC--UGCG-GUCU-GCGACUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 22854 0.68 0.819969
Target:  5'- uCCGagGAUcCCGGACGUcccGGCCGuCGCg -3'
miRNA:   3'- -GGCagCUGcGGUCUGCGa--CUGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 23212 0.66 0.903151
Target:  5'- aCCGUCacguccagggacauGAaGCCcgGGGCGUUG-CCGUGCg -3'
miRNA:   3'- -GGCAG--------------CUgCGG--UCUGCGACuGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 23459 0.69 0.759616
Target:  5'- uCCGgaUCGACGUCGGGgcggaggggucUGCcaUGAUCGCGCc -3'
miRNA:   3'- -GGC--AGCUGCGGUCU-----------GCG--ACUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 28668 0.66 0.88629
Target:  5'- cCCGgaacCGcCGCCGGugGCcGucGCCGcCGCc -3'
miRNA:   3'- -GGCa---GCuGCGGUCugCGaC--UGGC-GCG- -5'
10728 5' -58.5 NC_002794.1 + 28714 0.68 0.803385
Target:  5'- gCCGUCGuCGCC-GcCGUccGACCGUGUc -3'
miRNA:   3'- -GGCAGCuGCGGuCuGCGa-CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 31388 0.7 0.72273
Target:  5'- gUCGUCGGCgGCCccgccGCGCccGCCGCGCc -3'
miRNA:   3'- -GGCAGCUG-CGGuc---UGCGacUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.