miRNA display CGI


Results 41 - 60 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10728 5' -58.5 NC_002794.1 + 31905 0.69 0.758712
Target:  5'- gCGUCGcugaugaGCGCCgacaGGACGUccaGCCGCGCc -3'
miRNA:   3'- gGCAGC-------UGCGG----UCUGCGac-UGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 32281 0.7 0.72273
Target:  5'- aUCGgcgagCGACGCCGccgccGcCGCggcGGCCGCGCc -3'
miRNA:   3'- -GGCa----GCUGCGGU-----CuGCGa--CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 33454 0.7 0.684723
Target:  5'- cUCGggCGGcCGCCGGACGCgcccacGCCGCuGCa -3'
miRNA:   3'- -GGCa-GCU-GCGGUCUGCGac----UGGCG-CG- -5'
10728 5' -58.5 NC_002794.1 + 34079 0.68 0.798299
Target:  5'- cCCGcCGGCgGCCGGGCaGCcgucgggcggcccgGACCGCGa -3'
miRNA:   3'- -GGCaGCUG-CGGUCUG-CGa-------------CUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 34246 0.66 0.898924
Target:  5'- aCGcgCGGCuGCC-GcCGCaggcgGACCGCGCg -3'
miRNA:   3'- gGCa-GCUG-CGGuCuGCGa----CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 34329 0.66 0.898924
Target:  5'- gCCGUC--CGCaAGGCGaC-GGCCGCGCc -3'
miRNA:   3'- -GGCAGcuGCGgUCUGC-GaCUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 34714 0.75 0.432337
Target:  5'- cCCGcCGGCGCCacgAGGCGCgggcGGCCGCa- -3'
miRNA:   3'- -GGCaGCUGCGG---UCUGCGa---CUGGCGcg -5'
10728 5' -58.5 NC_002794.1 + 35293 0.68 0.789714
Target:  5'- gCGUCGuGCGCCcucGGACGgaccgccaguucaccCUGugCGUGCu -3'
miRNA:   3'- gGCAGC-UGCGG---UCUGC---------------GACugGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 36390 0.68 0.786244
Target:  5'- gCgGUCGAC-CCAGAaaucGACCGCGUa -3'
miRNA:   3'- -GgCAGCUGcGGUCUgcgaCUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 36912 0.72 0.587967
Target:  5'- gUCG-CGGCGCCGGcccCGC-GACCGCGg -3'
miRNA:   3'- -GGCaGCUGCGGUCu--GCGaCUGGCGCg -5'
10728 5' -58.5 NC_002794.1 + 36953 0.66 0.904931
Target:  5'- gUCGcgCGGCGgCAGGCagucGCgcaggagGAUCGCGCg -3'
miRNA:   3'- -GGCa-GCUGCgGUCUG----CGa------CUGGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 37247 0.68 0.786244
Target:  5'- gUCGUCGACGCUcu-CGCUcuccgucggcGGgCGCGCg -3'
miRNA:   3'- -GGCAGCUGCGGucuGCGA----------CUgGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 37369 0.66 0.88629
Target:  5'- -aGUCGAaGCuCGGGCGCaGGCCGuCGa -3'
miRNA:   3'- ggCAGCUgCG-GUCUGCGaCUGGC-GCg -5'
10728 5' -58.5 NC_002794.1 + 37743 0.68 0.811751
Target:  5'- gCCGcCGGCGgCGG-CGC-GGCgGCGCc -3'
miRNA:   3'- -GGCaGCUGCgGUCuGCGaCUGgCGCG- -5'
10728 5' -58.5 NC_002794.1 + 37868 0.66 0.88629
Target:  5'- uCCgGUCGGCGUCucgggcggcggGGGCGgUGGCgGCGg -3'
miRNA:   3'- -GG-CAGCUGCGG-----------UCUGCgACUGgCGCg -5'
10728 5' -58.5 NC_002794.1 + 38499 0.66 0.904931
Target:  5'- gCGgCGGCGCCGGuCGCc-GCCGCcuccGCg -3'
miRNA:   3'- gGCaGCUGCGGUCuGCGacUGGCG----CG- -5'
10728 5' -58.5 NC_002794.1 + 38567 0.67 0.851243
Target:  5'- cCCGcCGGCGCCucGACGgaGucgGCCGCc- -3'
miRNA:   3'- -GGCaGCUGCGGu-CUGCgaC---UGGCGcg -5'
10728 5' -58.5 NC_002794.1 + 38636 0.68 0.819969
Target:  5'- gCCGgugCGGCGCgaCGGAgGCUcGAcuauuugacucCCGCGCg -3'
miRNA:   3'- -GGCa--GCUGCG--GUCUgCGA-CU-----------GGCGCG- -5'
10728 5' -58.5 NC_002794.1 + 38706 0.66 0.879668
Target:  5'- gCCGUCGAgCGCCccGGcCGCcgaaaugggGACCuCGCa -3'
miRNA:   3'- -GGCAGCU-GCGG--UCuGCGa--------CUGGcGCG- -5'
10728 5' -58.5 NC_002794.1 + 39693 0.69 0.732076
Target:  5'- uUCGUCGcccggcacCGCCGG-CGCUaccGACCGCuGCa -3'
miRNA:   3'- -GGCAGCu-------GCGGUCuGCGA---CUGGCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.